RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 C9orf47Q6ZRZ4 202 aa8.47□□□□□ -1.05
YBX3-217ENST00000546164 HSD17B11Q8NBQ5 300 aa8.47□□□□□ -1.05
YBX3-217ENST00000546164 FAM19A4Q96LR4 140 aa8.47□□□□□ -1.05
YBX3-217ENST00000546164 LINC01587Q99440 93 aa8.47□□□□□ -1.05
YBX3-217ENST00000546164 DEFB131BA0A096LNP1 70 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 PLAC8L1A1L4L8 177 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 LYRM9A8MSI8 78 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 NMBP08949 121 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 LGALS9CQ6DKI2 356 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 ZNF767PQ75MW2 155 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 OR10G4Q8NGN3 311 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 OR10G9Q8NGN4 311 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 OR10G7Q8NGN6 311 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 NIPSNAP3BQ9BS92 247 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 AGPAT4-IT1Q9H0P7 198 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 APLNQ9ULZ1 77 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 DNAH10Q8IVF4 4471 aa8.46□□□□□ -1.06
YBX3-217ENST00000546164 TRBV7-9A0A0J9YWB2 115 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 A0A1W2PPV4 95 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 RBAKDNA6NC62 111 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 KLLNB2CW77 178 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 IGLL5B9A064 214 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 MBP02144 154 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 SLC25A5P05141 298 aaKnown RBP8.45□□□□□ -1.06
YBX3-217ENST00000546164 CRISP2P16562 243 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 AZU1P20160 251 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 RANP62826 216 aaKnown RBP8.45□□□□□ -1.06
YBX3-217ENST00000546164 ERCC8Q13216 396 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 FAM122CQ6P4D5 195 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 ZNF493Q6ZR52 646 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 ARL6IP6Q8N6S5 226 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 GNPNAT1Q96EK6 184 aaPredicted RBP8.45□□□□□ -1.06
YBX3-217ENST00000546164 Q9H3A6 140 aa8.45□□□□□ -1.06
YBX3-217ENST00000546164 IGKV2-40A0A087WW87 121 aaPredicted RBP8.44□□□□□ -1.06
YBX3-217ENST00000546164 BORCS7-ASMTA0A0B4J1R7 106 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 LY6G6CO95867 125 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 IGKV2D-40P01614 121 aaPredicted RBP8.44□□□□□ -1.06
YBX3-217ENST00000546164 PRM2P04554 102 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 STAG3L2P0CL84 134 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 STAG3L3P0CL85 134 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 CSN1S1P47710 185 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 CDC34P49427 236 aaPredicted RBP8.44□□□□□ -1.06
YBX3-217ENST00000546164 TMEM78Q5T7P6 136 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 RPL7L1Q6DKI1 246 aaKnown RBP8.44□□□□□ -1.06
YBX3-217ENST00000546164 RNASE8Q8TDE3 154 aaKnown RBP8.44□□□□□ -1.06
YBX3-217ENST00000546164 RXFP4Q8TDU9 374 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 TMEM263Q8WUH6 116 aaKnown RBP8.44□□□□□ -1.06
YBX3-217ENST00000546164 C16orf74Q96GX8 76 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 FAM210BQ96KR6 192 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 PYGO2Q9BRQ0 406 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 OTORQ9NRC9 128 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 ZNF492Q9P255 531 aa8.44□□□□□ -1.06
YBX3-217ENST00000546164 EPPK1P58107 5090 aaKnown RBP8.43□□□□□ -1.06
YBX3-217ENST00000546164 IGHV4-4A0A075B6R2 117 aa8.43□□□□□ -1.06
YBX3-217ENST00000546164 C7orf71A4D174 169 aa8.43□□□□□ -1.06
YBX3-217ENST00000546164 TAAR5O14804 337 aa8.43□□□□□ -1.06
YBX3-217ENST00000546164 ARPC5O15511 151 aa8.43□□□□□ -1.06
YBX3-217ENST00000546164 EIF3GO75821 320 aaKnown RBP eCLIP8.43□□□□□ -1.06
YBX3-217ENST00000546164 ZFAND2AQ8N6M9 145 aa8.43□□□□□ -1.06
YBX3-217ENST00000546164 SUN5Q8TC36 379 aa8.43□□□□□ -1.06
YBX3-217ENST00000546164 VGLL1Q99990 258 aa8.43□□□□□ -1.06
YBX3-217ENST00000546164 LINC00467Q9BRT7 94 aa8.43□□□□□ -1.06
YBX3-217ENST00000546164 SH3BGRL3Q9H299 93 aa8.43□□□□□ -1.06
YBX3-217ENST00000546164 TRAV12-3A0A0B4J271 114 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 DIRC3C9JPN6 131 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 ZNF324O75467 553 aaPredicted RBP8.42□□□□□ -1.06
YBX3-217ENST00000546164 ARL14EPLP0DKL9 152 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 ZNF138P52744 262 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 DAD1P61803 113 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 ZNF345Q14585 488 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 FAM74A1Q5RGS3 127 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 CCDC28AQ8IWP9 274 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 TMED6Q8WW62 240 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 RAB24Q969Q5 203 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 CYTL1Q9NRR1 136 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 TIMM8BQ9Y5J9 83 aaPredicted RBP8.42□□□□□ -1.06
YBX3-217ENST00000546164 LENEPQ9Y5L5 61 aa8.42□□□□□ -1.06
YBX3-217ENST00000546164 HMSDA8MTL9 139 aa8.41□□□□□ -1.06
YBX3-217ENST00000546164 J3KRW8 73 aa8.41□□□□□ -1.06
YBX3-217ENST00000546164 HMGB3O15347 200 aaKnown RBP8.41□□□□□ -1.06
YBX3-217ENST00000546164 HTN1P15515 57 aa8.41□□□□□ -1.06
YBX3-217ENST00000546164 CD300CQ08708 224 aa8.41□□□□□ -1.06
YBX3-217ENST00000546164 BTN1A1Q13410 526 aa8.41□□□□□ -1.06
YBX3-217ENST00000546164 LINC00612Q8N6U2 182 aa8.41□□□□□ -1.06
YBX3-217ENST00000546164 NDUFAF3Q9BU61 184 aa8.41□□□□□ -1.06
YBX3-217ENST00000546164 ACTR3CQ9C0K3 210 aaPredicted RBP8.41□□□□□ -1.06
YBX3-217ENST00000546164 PGPA6NDG6 321 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 SMLR1H3BR10 107 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 GPX1P07203 203 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 GCHFRP30047 84 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 ANXA2RQ3ZCQ2 193 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 KCNRGQ8N5I3 272 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 Q8TAT8 98 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 CMTM2Q8TAZ6 248 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 ST6GAL2Q96JF0 529 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 TMEM167BQ9NRX6 74 aa8.4□□□□□ -1.06
YBX3-217ENST00000546164 BIRC6Q9NR09 4857 aa8.39□□□□□ -1.07
YBX3-217ENST00000546164 CBY3A6NI87 242 aa8.39□□□□□ -1.07
YBX3-217ENST00000546164 CXorf1O96002 111 aa8.39□□□□□ -1.07
YBX3-217ENST00000546164 DEFB130BP0DP73 79 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms