RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 CELSR1Q9NYQ6 3014 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 MUC21A0A0G2JKD1 596 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 MUC21A0A140T8X8 626 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 FAM223BA6NKX1 122 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 MUC21Q5SSG8 566 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 FAM223AQ8IWN6 122 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 FER1L6-AS1Q8NA97 138 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 ATP6V0BQ99437 205 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 U3KQK5 164 aa13.87□□□□□ -0.19
VIM-209ENST00000544301 C20orf202A1L168 122 aa13.86□□□□□ -0.19
VIM-209ENST00000544301 IGLC6P0CF74 106 aa13.86□□□□□ -0.19
VIM-209ENST00000544301 ATP5J2P56134 94 aa13.86□□□□□ -0.19
VIM-209ENST00000544301 Q6ZN92 141 aa13.86□□□□□ -0.19
VIM-209ENST00000544301 AMN1Q8IY45 258 aa13.86□□□□□ -0.19
VIM-209ENST00000544301 PSMG3-AS1Q96PY0 264 aa13.86□□□□□ -0.19
VIM-209ENST00000544301 IGHV4-30-2A0A087WSY4 118 aa13.85□□□□□ -0.19
VIM-209ENST00000544301 TRAV8-2A0A0B4J237 113 aa13.85□□□□□ -0.19
VIM-209ENST00000544301 FABP5P3A8MUU1 101 aa13.85□□□□□ -0.19
VIM-209ENST00000544301 TCAPO15273 167 aa13.85□□□□□ -0.19
VIM-209ENST00000544301 D6R8Y8 96 aa13.85□□□□□ -0.19
VIM-209ENST00000544301 TRGV3P03979 118 aa13.85□□□□□ -0.19
VIM-209ENST00000544301 IGLL1P15814 213 aa13.85□□□□□ -0.19
VIM-209ENST00000544301 AP5S1Q9NUS5 200 aa13.85□□□□□ -0.19
VIM-209ENST00000544301 FLNCQ14315 2725 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 IGSF10Q6WRI0 2623 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 OR4C46A6NHA9 309 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 ORM1P02763 201 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 C8orf86Q6ZUL3 223 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 IL17RELQ6ZVW7 336 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 PRSS3P2Q8NHM4 247 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 HSPB8Q9UJY1 196 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 IGF1P05019 195 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 RPLP1P05386 114 aaKnown RBP13.84□□□□□ -0.19
VIM-209ENST00000544301 HNRNPA3P51991 378 aaKnown RBP13.84□□□□□ -0.19
VIM-209ENST00000544301 TWIST1Q15672 202 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 BATFQ16520 125 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 LY6EQ16553 131 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 FA2HQ7L5A8 372 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 MAP1LC3CQ9BXW4 147 aa13.84□□□□□ -0.19
VIM-209ENST00000544301 MRPL51Q4U2R6 128 aaKnown RBP13.83□□□□□ -0.2
VIM-209ENST00000544301 PRELID3AQ96N28 172 aa13.83□□□□□ -0.2
VIM-209ENST00000544301 AGPAT4-IT1Q9H0P7 198 aa13.83□□□□□ -0.2
VIM-209ENST00000544301 IFI27P40305 119 aaPredicted RBP13.82□□□□□ -0.2
VIM-209ENST00000544301 ORMDL3Q8N138 153 aa13.82□□□□□ -0.2
VIM-209ENST00000544301 MRPL53Q96EL3 112 aaKnown RBP13.82□□□□□ -0.2
VIM-209ENST00000544301 A6NDX4 124 aa13.82□□□□□ -0.2
VIM-209ENST00000544301 ARL3P36405 182 aa13.82□□□□□ -0.2
VIM-209ENST00000544301 LINC01559Q495D7 138 aa13.82□□□□□ -0.2
VIM-209ENST00000544301 PET117Q6UWS5 81 aa13.82□□□□□ -0.2
VIM-209ENST00000544301 SIGLEC8Q9NYZ4 499 aa13.82□□□□□ -0.2
VIM-209ENST00000544301 TMEM8BA6NDV4 472 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 H3BUX3 64 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 MSMBP08118 114 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 DOPEY1Q5JWR5 2465 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 LOC389332A0A1B0GUA5 103 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 TRBV12-3P01733 135 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 IGHG2P01859 326 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 TSPOP30536 169 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 FAM106AQ4KMX7 169 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 OR10AG1Q8NH19 301 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 CNFNQ9BYD5 112 aa13.81□□□□□ -0.2
VIM-209ENST00000544301 TIMM8BQ9Y5J9 83 aaPredicted RBP13.81□□□□□ -0.2
VIM-209ENST00000544301 PPIFP30405 207 aaKnown RBP13.8□□□□□ -0.2
VIM-209ENST00000544301 GLMPQ8WWB7 406 aa13.8□□□□□ -0.2
VIM-209ENST00000544301 TMEM191AQ9H0A3 160 aa13.8□□□□□ -0.2
VIM-209ENST00000544301 TMEM78Q5T7P6 136 aa13.79□□□□□ -0.2
VIM-209ENST00000544301 ZNF747Q9BV97 191 aa13.79□□□□□ -0.2
VIM-209ENST00000544301 HIF1ANQ9NWT6 349 aa13.79□□□□□ -0.2
VIM-209ENST00000544301 MSRB1Q9NZV6 116 aa13.79□□□□□ -0.2
VIM-209ENST00000544301 LAMTOR2Q9Y2Q5 125 aa13.79□□□□□ -0.2
VIM-209ENST00000544301 CELSR2Q9HCU4 2923 aa13.79□□□□□ -0.2
VIM-209ENST00000544301 MAP1AP78559 2803 aaPredicted RBP13.79□□□□□ -0.2
VIM-209ENST00000544301 BRI3O95415 125 aa13.79□□□□□ -0.2
VIM-209ENST00000544301 LOXL1Q08397 574 aaPredicted RBP13.79□□□□□ -0.2
VIM-209ENST00000544301 UNQ9165/PRO28630Q6UXU0 137 aa13.79□□□□□ -0.2
VIM-209ENST00000544301 MCRIP2Q9BUT9 160 aaKnown RBP13.79□□□□□ -0.2
VIM-209ENST00000544301 MRPS16Q9Y3D3 137 aaKnown RBP13.79□□□□□ -0.2
VIM-209ENST00000544301 USP9XQ93008 2570 aaPredicted RBP13.79□□□□□ -0.2
VIM-209ENST00000544301 A0A096LNJ9 63 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 SMKR1H3BMG3 65 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 CKS2P33552 79 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 HIST1H1AQ02539 215 aaPredicted RBP13.78□□□□□ -0.2
VIM-209ENST00000544301 C9orf47Q6ZRZ4 202 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 ST20Q9HBF5 79 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 C11orf21Q9P2W6 132 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 IGKV3D-20A0A0C4DH25 116 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 hDV102S1A0JD36 115 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 H0Y8G0 127 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 H3BUA1 57 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 COL5A1-AS1Q5SY13 56 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 USMG5Q96IX5 58 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 C16orf92Q96LL3 132 aa13.78□□□□□ -0.2
VIM-209ENST00000544301 NDUFA4O00483 81 aa13.77□□□□□ -0.21
VIM-209ENST00000544301 SMAD7O15105 426 aaKnown RBP13.77□□□□□ -0.21
VIM-209ENST00000544301 BLCAPP62952 87 aa13.77□□□□□ -0.21
VIM-209ENST00000544301 LINC01545Q5VT33 79 aa13.77□□□□□ -0.21
VIM-209ENST00000544301 RNF185Q96GF1 192 aa13.77□□□□□ -0.21
VIM-209ENST00000544301 SPG11Q96JI7 2443 aa13.77□□□□□ -0.21
VIM-209ENST00000544301 NPYP01303 97 aa13.76□□□□□ -0.21
VIM-209ENST00000544301 G0S2P27469 103 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 68.4 ms