RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 IGHV4-39P01824 125 aa9.74□□□□□ -0.85
RNF4-222ENST00000541204 ECSCRQ19T08 205 aa9.74□□□□□ -0.85
RNF4-222ENST00000541204 FAM104BQ5XKR9 115 aa9.74□□□□□ -0.85
RNF4-222ENST00000541204 C1orf122Q6ZSJ8 110 aa9.74□□□□□ -0.85
RNF4-222ENST00000541204 PIP4P2Q8N4L2 257 aa9.74□□□□□ -0.85
RNF4-222ENST00000541204 PDE6HQ13956 83 aa9.74□□□□□ -0.85
RNF4-222ENST00000541204 F8W735 103 aaPredicted RBP9.73□□□□□ -0.85
RNF4-222ENST00000541204 CD5LO43866 347 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 RNF151Q2KHN1 245 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 ANKRD39Q53RE8 183 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 IGFL4Q6B9Z1 124 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 ORMDL3Q8N138 153 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 IGLV11-55A0A075B6I3 123 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 IGHV7-81A0A0B4J1V7 117 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 SMKR1H3BMG3 65 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 MFAP4P55083 255 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 PSG9Q00887 426 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 MRPL51Q4U2R6 128 aaKnown RBP9.73□□□□□ -0.85
RNF4-222ENST00000541204 Q8TAT8 98 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 TMEM190Q8WZ59 177 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 U3KQK5 164 aa9.73□□□□□ -0.85
RNF4-222ENST00000541204 EGR2P11161 476 aaPredicted RBP9.72□□□□□ -0.85
RNF4-222ENST00000541204 MINOS1Q5TGZ0 78 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 Q8N6K4 173 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 Q8N9W7 124 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 MINOS1-NBL1R4GNA1 71 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 TRAV8-6A0A0B4J262 113 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 LINC01548A6NM66 108 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 NPIPB5A8MRT5 1133 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 CDKN1BP46527 198 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 CACNG7P62955 275 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 TMEM219Q86XT9 240 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 C21orf62Q9NYP8 219 aa9.72□□□□□ -0.85
RNF4-222ENST00000541204 ZNF80P51504 273 aaPredicted RBP9.71□□□□□ -0.85
RNF4-222ENST00000541204 UBE2E1P51965 193 aa9.71□□□□□ -0.85
RNF4-222ENST00000541204 TWIST1Q15672 202 aa9.71□□□□□ -0.85
RNF4-222ENST00000541204 BRD3OSQ6XYD6 125 aa9.71□□□□□ -0.85
RNF4-222ENST00000541204 AJUBAQ96IF1 538 aa9.71□□□□□ -0.85
RNF4-222ENST00000541204 PRR25Q96S07 402 aa9.71□□□□□ -0.85
RNF4-222ENST00000541204 FGF6P10767 208 aa9.71□□□□□ -0.86
RNF4-222ENST00000541204 HLA-DMBP28068 263 aa9.71□□□□□ -0.86
RNF4-222ENST00000541204 S100A7AQ86SG5 101 aa9.71□□□□□ -0.86
RNF4-222ENST00000541204 VGLL1Q99990 258 aa9.71□□□□□ -0.86
RNF4-222ENST00000541204 C7orf71A4D174 169 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 G3V318 75 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 NPYP01303 97 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 CKS2P33552 79 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 TMEM97Q5BJF2 176 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 TTC9CQ8N5M4 171 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 DOPEY1Q5JWR5 2465 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 WFDC3Q8IUB2 231 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 CST9LQ9H4G1 147 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 RABAC1Q9UI14 185 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 LINC00527Q9UJ94 153 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 FAM208BQ5VWN6 2430 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 POLQO75417 2590 aa9.7□□□□□ -0.86
RNF4-222ENST00000541204 OOSP1A8MZH6 123 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 ATP6V0E1O15342 81 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 HBDP02042 147 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 PAX8Q06710 450 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 LGALS9BQ3B8N2 356 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 SAPCD1Q5SSQ6 148 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 LGALS9CQ6DKI2 356 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 FER1L6-AS1Q8NA97 138 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 NRGNQ92686 78 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 CCL19Q99731 98 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 SMAD5-AS1Q9Y6J3 95 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 IGHV4-61A0A0C4DH41 118 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 CENPVL3A0A0U1RRI6 287 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 NPFFO15130 113 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 RPL7P18124 248 aaKnown RBP9.69□□□□□ -0.86
RNF4-222ENST00000541204 MSRB1Q9NZV6 116 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 PEF1Q9UBV8 284 aaKnown RBP9.69□□□□□ -0.86
RNF4-222ENST00000541204 ABCA2Q9BZC7 2435 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 IGHG4P01861 327 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 PRB1P04280 392 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 EBI3Q14213 229 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 ZNF575Q86XF7 245 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 ZNF48Q96MX3 618 aaPredicted RBP9.69□□□□□ -0.86
RNF4-222ENST00000541204 THYN1Q9P016 225 aa9.69□□□□□ -0.86
RNF4-222ENST00000541204 ZNF462Q96JM2 2506 aa9.68□□□□□ -0.86
RNF4-222ENST00000541204 C15orf32Q32M92 178 aa9.68□□□□□ -0.86
RNF4-222ENST00000541204 IFI27L1Q96BM0 104 aa9.68□□□□□ -0.86
RNF4-222ENST00000541204 IGHV3OR16-13A0A075B7E8 117 aa9.68□□□□□ -0.86
RNF4-222ENST00000541204 IGHV3-74A0A0B4J1X5 117 aa9.68□□□□□ -0.86
RNF4-222ENST00000541204 CTSGP08311 255 aa9.68□□□□□ -0.86
RNF4-222ENST00000541204 COX8CQ7Z4L0 72 aa9.68□□□□□ -0.86
RNF4-222ENST00000541204 DPF1Q92782 380 aa9.68□□□□□ -0.86
RNF4-222ENST00000541204 TRAV40A0A0B4J280 105 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 IGHV3-66A0A0C4DH42 116 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 GAGE12BA1L429 117 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 GAS8-AS1O95177 125 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 ORM1P02763 201 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 SEC11AP67812 179 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 OCIAD2Q56VL3 154 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 BOD1L2Q8IYS8 172 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 OR1N2Q8NGR9 330 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 SELENOKQ9Y6D0 94 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 LRRK2Q5S007 2527 aa9.67□□□□□ -0.86
RNF4-222ENST00000541204 USP24Q9UPU5 2620 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms