RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 LYPD1Q8N2G4 141 aa10.04□□□□□ -0.8
USP28-209ENST00000540925 TMEM263Q8WUH6 116 aaKnown RBP10.04□□□□□ -0.8
USP28-209ENST00000540925 LINC00477Q96M19 166 aa10.04□□□□□ -0.8
USP28-209ENST00000540925 AAMDCQ9H7C9 122 aa10.04□□□□□ -0.8
USP28-209ENST00000540925 IGKV2-40A0A087WW87 121 aaPredicted RBP10.03□□□□□ -0.8
USP28-209ENST00000540925 ZNF324O75467 553 aaPredicted RBP10.03□□□□□ -0.8
USP28-209ENST00000540925 IGKV2D-40P01614 121 aaPredicted RBP10.03□□□□□ -0.8
USP28-209ENST00000540925 SLC25A5P05141 298 aaKnown RBP10.03□□□□□ -0.8
USP28-209ENST00000540925 NMBP08949 121 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 RAB2AP61019 212 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 DAD1P61803 113 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 ZNF266Q14584 549 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 FAM122CQ6P4D5 195 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 ZFAND2AQ8N6M9 145 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 LINC00612Q8N6U2 182 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 VGLL1Q99990 258 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 LINC00467Q9BRT7 94 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 PSMG3Q9BT73 122 aaPredicted RBP10.03□□□□□ -0.8
USP28-209ENST00000540925 NDUFAF3Q9BU61 184 aa10.03□□□□□ -0.8
USP28-209ENST00000540925 TRAV12-3A0A0B4J271 114 aa10.02□□□□□ -0.81
USP28-209ENST00000540925 EIF3GO75821 320 aaKnown RBP eCLIP10.02□□□□□ -0.81
USP28-209ENST00000540925 TAS2R45P59539 299 aa10.02□□□□□ -0.81
USP28-209ENST00000540925 UBE2L3P68036 154 aaKnown RBP10.02□□□□□ -0.81
USP28-209ENST00000540925 ACOT6Q3I5F7 207 aaPredicted RBP10.02□□□□□ -0.81
USP28-209ENST00000540925 ZNF492Q9P255 531 aa10.02□□□□□ -0.81
USP28-209ENST00000540925 TNFSF18Q9UNG2 199 aa10.02□□□□□ -0.81
USP28-209ENST00000540925 TRBV7-9A0A0J9YWB2 115 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 C7orf71A4D174 169 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 RBAKDNA6NC62 111 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 ATP6V0CP27449 155 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 RANP62826 216 aaKnown RBP10.01□□□□□ -0.81
USP28-209ENST00000540925 CD300CQ08708 224 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 PRR9Q5T870 116 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 PQLC2Q6ZP29 291 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 OR2T35Q8NGX2 323 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 PYGO2Q9BRQ0 406 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 Q9H3A6 140 aa10.01□□□□□ -0.81
USP28-209ENST00000540925 TIMM8BQ9Y5J9 83 aaPredicted RBP10.01□□□□□ -0.81
USP28-209ENST00000540925 J3KRW8 73 aa10□□□□□ -0.81
USP28-209ENST00000540925 HTN1P15515 57 aa10□□□□□ -0.81
USP28-209ENST00000540925 BTN1A1Q13410 526 aa10□□□□□ -0.81
USP28-209ENST00000540925 HSD17B11Q8NBQ5 300 aa10□□□□□ -0.81
USP28-209ENST00000540925 C11orf72Q8NBR9 251 aa10□□□□□ -0.81
USP28-209ENST00000540925 OR10G4Q8NGN3 311 aa10□□□□□ -0.81
USP28-209ENST00000540925 OR10G9Q8NGN4 311 aa10□□□□□ -0.81
USP28-209ENST00000540925 OR10G7Q8NGN6 311 aa10□□□□□ -0.81
USP28-209ENST00000540925 SUN5Q8TC36 379 aa10□□□□□ -0.81
USP28-209ENST00000540925 CBY3A6NI87 242 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 DIRC3C9JPN6 131 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 STAG3L2P0CL84 134 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 STAG3L3P0CL85 134 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 DEFB130BP0DP73 79 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 DEFB130AP0DP74 79 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 ZNF138P52744 262 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 SERF2P84101 59 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 TMEM78Q5T7P6 136 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 TMEM88Q6PEY1 159 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 ARL6IP6Q8N6S5 226 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 NOP10Q9NPE3 64 aaKnown RBP9.99□□□□□ -0.81
USP28-209ENST00000540925 OTORQ9NRC9 128 aa9.99□□□□□ -0.81
USP28-209ENST00000540925 FXYD6-FXYD2A0A087WZ82 144 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 A0A1W2PPV4 95 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 P0DMU3 169 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 FAM231AP0DMU4 169 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 FAM231CP0DMU5 169 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 HTN3P15516 51 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 DAZ2Q13117 558 aaKnown RBP9.98□□□□□ -0.81
USP28-209ENST00000540925 ANXA2RQ3ZCQ2 193 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 RPL7L1Q6DKI1 246 aaKnown RBP9.98□□□□□ -0.81
USP28-209ENST00000540925 Q6ZQT7 251 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 POM121L12Q8N7R1 296 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 INO80EQ8NBZ0 244 aaPredicted RBP9.98□□□□□ -0.81
USP28-209ENST00000540925 Q8TAT8 98 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 SH3BGRL3Q9H299 93 aa9.98□□□□□ -0.81
USP28-209ENST00000540925 GPX1P07203 203 aa9.97□□□□□ -0.81
USP28-209ENST00000540925 ARL14EPLP0DKL9 152 aa9.97□□□□□ -0.81
USP28-209ENST00000540925 RNASE4P34096 147 aaKnown RBP9.97□□□□□ -0.81
USP28-209ENST00000540925 CSN1S1P47710 185 aa9.97□□□□□ -0.81
USP28-209ENST00000540925 CDC34P49427 236 aaPredicted RBP9.97□□□□□ -0.81
USP28-209ENST00000540925 CCDC28AQ8IWP9 274 aa9.97□□□□□ -0.81
USP28-209ENST00000540925 RXFP4Q8TDU9 374 aa9.97□□□□□ -0.81
USP28-209ENST00000540925 TMED6Q8WW62 240 aa9.97□□□□□ -0.81
USP28-209ENST00000540925 RAB24Q969Q5 203 aa9.97□□□□□ -0.81
USP28-209ENST00000540925 LENEPQ9Y5L5 61 aa9.97□□□□□ -0.81
USP28-209ENST00000540925 PKD1P98161 4303 aa9.96□□□□□ -0.81
USP28-209ENST00000540925 HMGB3O15347 200 aaKnown RBP9.96□□□□□ -0.82
USP28-209ENST00000540925 MBP02144 154 aa9.96□□□□□ -0.82
USP28-209ENST00000540925 ATP5G1P05496 136 aa9.96□□□□□ -0.82
USP28-209ENST00000540925 ATP5G3P48201 142 aa9.96□□□□□ -0.82
USP28-209ENST00000540925 SSX7Q7RTT5 188 aa9.96□□□□□ -0.82
USP28-209ENST00000540925 EIF4E3Q8N5X7 224 aaKnown RBP9.96□□□□□ -0.82
USP28-209ENST00000540925 CYTL1Q9NRR1 136 aa9.96□□□□□ -0.82
USP28-209ENST00000540925 PGPA6NDG6 321 aa9.95□□□□□ -0.82
USP28-209ENST00000540925 C15orf53Q8NAA6 179 aa9.95□□□□□ -0.82
USP28-209ENST00000540925 ZNF680Q8NEM1 530 aa9.95□□□□□ -0.82
USP28-209ENST00000540925 GNPNAT1Q96EK6 184 aaPredicted RBP9.95□□□□□ -0.82
USP28-209ENST00000540925 C18orf15Q96N68 181 aa9.95□□□□□ -0.82
USP28-209ENST00000540925 GSN-AS1Q9NRJ2 163 aa9.95□□□□□ -0.82
USP28-209ENST00000540925 PKHD1P08F94 4074 aa9.95□□□□□ -0.82
USP28-209ENST00000540925 SNURFLB1AK76 121 aa9.94□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms