RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 SRSF9Q13242 221 aaKnown RBP eCLIP8.41□□□□□ -1.06
RTN3-208ENST00000537981 RIGQ13278 110 aa8.41□□□□□ -1.06
RTN3-208ENST00000537981 TBC1D28Q2M2D7 210 aa8.41□□□□□ -1.06
RTN3-208ENST00000537981 GAGE2EQ4V326 116 aa8.41□□□□□ -1.06
RTN3-208ENST00000537981 C17orf82Q86X59 251 aaPredicted RBP8.41□□□□□ -1.06
RTN3-208ENST00000537981 ORMDL3Q8N138 153 aa8.41□□□□□ -1.06
RTN3-208ENST00000537981 PRSS33Q8NF86 280 aa8.41□□□□□ -1.06
RTN3-208ENST00000537981 TMEM158Q8WZ71 300 aa8.41□□□□□ -1.06
RTN3-208ENST00000537981 MSRB1Q9NZV6 116 aa8.41□□□□□ -1.06
RTN3-208ENST00000537981 GAGE2DQ9UEU5 116 aa8.41□□□□□ -1.06
RTN3-208ENST00000537981 PROCRQ9UNN8 238 aa8.41□□□□□ -1.06
RTN3-208ENST00000537981 SCRG1O75711 98 aa8.4□□□□□ -1.06
RTN3-208ENST00000537981 NDUFA3O95167 84 aa8.4□□□□□ -1.06
RTN3-208ENST00000537981 TCF15Q12870 199 aa8.4□□□□□ -1.06
RTN3-208ENST00000537981 FAM104BQ5XKR9 115 aa8.4□□□□□ -1.06
RTN3-208ENST00000537981 UBTD1Q9HAC8 227 aa8.4□□□□□ -1.06
RTN3-208ENST00000537981 CALYQ9NYX4 217 aa8.4□□□□□ -1.06
RTN3-208ENST00000537981 RAXQ9Y2V3 346 aa8.4□□□□□ -1.06
RTN3-208ENST00000537981 U3KQK5 164 aa8.4□□□□□ -1.06
RTN3-208ENST00000537981 HOXA3O43365 443 aaPredicted RBP8.4□□□□□ -1.07
RTN3-208ENST00000537981 GP9P14770 177 aa8.4□□□□□ -1.07
RTN3-208ENST00000537981 MDP1Q86V88 176 aa8.4□□□□□ -1.07
RTN3-208ENST00000537981 Q8IYB0 196 aa8.4□□□□□ -1.07
RTN3-208ENST00000537981 OCIAD1Q9NX40 245 aa8.4□□□□□ -1.07
RTN3-208ENST00000537981 CSDC2Q9Y534 153 aaKnown RBP8.4□□□□□ -1.07
RTN3-208ENST00000537981 IGHV3OR15-7A0A075B7D8 119 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 IL4P05112 153 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 IFITM1P13164 125 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 C2orf83Q53S99 150 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 RASL10AQ92737 203 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 ATMQ13315 3056 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 CENPVL3A0A0U1RRI6 287 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 C10orf142B7Z368 130 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 CKS2P33552 79 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 RPL11P62913 178 aaKnown RBP8.39□□□□□ -1.07
RTN3-208ENST00000537981 PLXDC1Q8IUK5 500 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 RBMXL3Q8N7X1 1067 aaKnown RBP8.39□□□□□ -1.07
RTN3-208ENST00000537981 ZNRF1Q8ND25 227 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 PIFOQ8TCI5 191 aa8.39□□□□□ -1.07
RTN3-208ENST00000537981 PIEZO1Q92508 2521 aa8.38□□□□□ -1.07
RTN3-208ENST00000537981 DPM2O94777 84 aa8.38□□□□□ -1.07
RTN3-208ENST00000537981 WT1-ASQ06250 92 aa8.38□□□□□ -1.07
RTN3-208ENST00000537981 TTC32Q5I0X7 151 aa8.38□□□□□ -1.07
RTN3-208ENST00000537981 GATD1Q8NB37 220 aa8.38□□□□□ -1.07
RTN3-208ENST00000537981 RPEQ96AT9 228 aa8.38□□□□□ -1.07
RTN3-208ENST00000537981 CHCHD5Q9BSY4 110 aa8.38□□□□□ -1.07
RTN3-208ENST00000537981 SAA1P0DJI8 122 aaPredicted RBP8.38□□□□□ -1.07
RTN3-208ENST00000537981 DUX4L9Q6RFH8 374 aaPredicted RBP8.38□□□□□ -1.07
RTN3-208ENST00000537981 PLEKHB2Q96CS7 222 aa8.38□□□□□ -1.07
RTN3-208ENST00000537981 RPUSD1Q9UJJ7 312 aaKnown RBP8.38□□□□□ -1.07
RTN3-208ENST00000537981 GVINP1Q7Z2Y8 2422 aa8.38□□□□□ -1.07
RTN3-208ENST00000537981 SPTBN2O15020 2390 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 TRAV8-2A0A0B4J237 113 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 UPK2O00526 184 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 UCNP55089 124 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 MRPS21P82921 87 aaKnown RBP8.37□□□□□ -1.07
RTN3-208ENST00000537981 PLGLB1Q02325 96 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 ZNF493Q6ZR52 646 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 PIP4P1Q86T03 277 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 PPP1R27Q86WC6 154 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 CEACAM4O75871 244 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 SNCGO76070 127 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 LINC00694P0DN24 101 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 MAGEA5P43359 124 aa8.37□□□□□ -1.07
RTN3-208ENST00000537981 TRPT1Q86TN4 253 aaKnown RBP8.37□□□□□ -1.07
RTN3-208ENST00000537981 M0R3E3 92 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 CRYGBP07316 175 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 EFNA4P52798 201 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 UBE2D3P61077 147 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 UBE2D2P62837 147 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 SPRNQ5BIV9 151 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 OR1L4Q8NGR5 311 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 OR1L8Q8NGR8 309 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 MAP1LC3AQ9H492 121 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 OTOGLQ3ZCN5 2332 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 LMO7DNF2Z398 122 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 TIMM8AO60220 97 aaPredicted RBP8.36□□□□□ -1.07
RTN3-208ENST00000537981 LGALS1P09382 135 aaKnown RBP8.36□□□□□ -1.07
RTN3-208ENST00000537981 SIGLEC15Q6ZMC9 328 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 SEM1Q6ZVN7 128 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 C11orf44Q8N8P7 122 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 TMEM75Q8N9X5 138 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 ODF3Q96PU9 254 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 RASL11BQ9BPW5 248 aa8.36□□□□□ -1.07
RTN3-208ENST00000537981 ZNF292O60281 2723 aa8.35□□□□□ -1.07
RTN3-208ENST00000537981 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa8.35□□□□□ -1.07
RTN3-208ENST00000537981 FAM201AQ5SY85 155 aa8.35□□□□□ -1.07
RTN3-208ENST00000537981 LINC01587Q99440 93 aa8.35□□□□□ -1.07
RTN3-208ENST00000537981 KLK5Q9Y337 293 aaPredicted RBP8.35□□□□□ -1.07
RTN3-208ENST00000537981 IGKV1D-17A0A075B6S4 117 aa8.35□□□□□ -1.07
RTN3-208ENST00000537981 MYMXA0A1B0GTQ4 84 aa8.35□□□□□ -1.07
RTN3-208ENST00000537981 A8MWV9 139 aa8.35□□□□□ -1.07
RTN3-208ENST00000537981 GLRXP35754 106 aa8.35□□□□□ -1.07
RTN3-208ENST00000537981 HCP5Q6MZN7 132 aa8.35□□□□□ -1.07
RTN3-208ENST00000537981 ZNF71Q9NQZ8 489 aaPredicted RBP8.35□□□□□ -1.07
RTN3-208ENST00000537981 IGHV1-45A0A0A0MS14 117 aa8.34□□□□□ -1.07
RTN3-208ENST00000537981 C17orf100A8MU93 164 aa8.34□□□□□ -1.07
RTN3-208ENST00000537981 FCN3O75636 299 aa8.34□□□□□ -1.07
RTN3-208ENST00000537981 COX6A1P12074 109 aa8.34□□□□□ -1.07
RTN3-208ENST00000537981 TWIST1Q15672 202 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms