RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 UBE2D2P62837 147 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 CST6Q15828 149 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 TMEM170BQ5T4T1 132 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 KRTAP5-7Q6L8G8 165 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 MFSD12Q6NUT3 480 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 DGAT2L6Q6ZPD8 337 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 Q6ZQT7 251 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 SLC25A48Q6ZT89 311 aaKnown RBP1.89□□□□□ -2.11
SKA3-207ENST00000536239 Q75L30 129 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 AAED1Q7RTV5 226 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 HMGN2P46Q86SG4 172 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 STHQ8IWL8 128 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 OR5AS1Q8N127 324 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 C1orf158Q8N1D5 194 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 EXOC3-AS1Q8N2X6 119 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 RPRMLQ8N4K4 120 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 GATAD1Q8WUU5 269 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 COPS9Q8WXC6 57 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 BMFQ96LC9 184 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 C1orf147Q96MC9 270 aaPredicted RBP1.89□□□□□ -2.11
SKA3-207ENST00000536239 ODF3Q96PU9 254 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 MGST2Q99735 147 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 MRPL20Q9BYC9 149 aaKnown RBP1.89□□□□□ -2.11
SKA3-207ENST00000536239 FAM60AQ9NP50 221 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 C19orf25Q9UFG5 118 aaPredicted RBP1.89□□□□□ -2.11
SKA3-207ENST00000536239 PILRAQ9UKJ1 303 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 ZNF256Q9Y2P7 627 aaPredicted RBP1.89□□□□□ -2.11
SKA3-207ENST00000536239 KLF13Q9Y2Y9 288 aaPredicted RBP1.89□□□□□ -2.11
SKA3-207ENST00000536239 KIAA1549LQ6ZVL6 1849 aa1.89□□□□□ -2.11
SKA3-207ENST00000536239 COL4A1P02462 1669 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 TRBV25-1A0A075B6N4 114 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 TRAV12-2A0A075B6T6 113 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 IGHV3OR16-10A0A075B7F0 116 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 TRAV8-1A0A0A6YYK1 113 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 IGLV9-49A0A0B4J1Y8 123 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 TRAV17A0A0B4J275 112 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 UBE2L5PA0A1B0GUS4 154 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 A0A1B0GWA3 101 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 A0A1B0GXF2 115 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 K7ERJ3 54 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 LGALS9O00182 355 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 ATOX1O00244 68 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 SOCS3O14543 225 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 CDX4O14627 284 aaPredicted RBP1.88□□□□□ -2.11
SKA3-207ENST00000536239 SLC25A20O43772 301 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 SPINK4O60575 86 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 PGLYRP1O75594 196 aaPredicted RBP1.88□□□□□ -2.11
SKA3-207ENST00000536239 IFI6P09912 130 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 PYYP10082 97 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 COX6A1P12074 109 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 COL8A2P25067 703 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 LOXP28300 417 aaPredicted RBP1.88□□□□□ -2.11
SKA3-207ENST00000536239 LEPP41159 167 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 FBXW4P57775 412 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 UBE2L3P68036 154 aaKnown RBP1.88□□□□□ -2.11
SKA3-207ENST00000536239 HBBP68871 147 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 MRPS36P82909 103 aaKnown RBP1.88□□□□□ -2.11
SKA3-207ENST00000536239 LOXL1Q08397 574 aaPredicted RBP1.88□□□□□ -2.11
SKA3-207ENST00000536239 PMAIP1Q13794 54 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 OR1C1Q15619 314 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 RSPO1Q2MKA7 263 aaPredicted RBP1.88□□□□□ -2.11
SKA3-207ENST00000536239 LINC01620Q4KN68 170 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 DEFB121Q5J5C9 76 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 ZNF493Q6ZR52 646 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 Q6ZSR3 168 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 LINC00173Q6ZV60 143 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 SLC25A45Q8N413 288 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 ZNF843Q8N446 348 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 RAB42Q8N4Z0 105 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 OR52N5Q8NH56 324 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 RFESDQ8TAC1 157 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 IFI27L1Q96BM0 104 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 C2orf48Q96LS8 159 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 HIST1H4GQ99525 98 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 FAM173AQ9BQD7 235 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 HDHD3Q9BSH5 251 aaPredicted RBP1.88□□□□□ -2.11
SKA3-207ENST00000536239 SHANK2-AS3Q9BTD1 123 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 NPCDR1Q9BY65 106 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 PRRG4Q9BZD6 226 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 STARD5Q9NSY2 213 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 RNF186Q9NXI6 227 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 EPDR1Q9UM22 224 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 LHFPL6Q9Y693 200 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 SERP1Q9Y6X1 66 aa1.88□□□□□ -2.11
SKA3-207ENST00000536239 TANC2Q9HCD6 1990 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 TRBV7-3A0A075B6L6 115 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 IGHV3OR15-7A0A075B7D8 119 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 IGKV1D-8A0A087WSZ0 117 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 SMIM26A0A096LP01 95 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 IGHV4-61A0A0C4DH41 118 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 LOC107984156A0A0G2JMH3 177 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 C15orf61A6NNL5 157 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 H3BSH0 61 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 H3BVH4 76 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 TCL1BO95988 128 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 IGHV4-59P01825 116 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 ARL14EPLP0DKL9 152 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 CTLA4P16410 223 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 ZNF823P16415 610 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 FKBP2P26885 142 aaKnown RBP1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms