RNA–Protein interactions for RNA: ENST00000535997.6

CHMP1A-202, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2 BASIC

Gene CHMP1A, Length 2,295 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-202ENST00000535997 UBE2V1Q13404 147 aa12.4□□□□□ -0.42
CHMP1A-202ENST00000535997 MUC21Q5SSG8 566 aa12.4□□□□□ -0.42
CHMP1A-202ENST00000535997 DPF1Q92782 380 aa12.4□□□□□ -0.42
CHMP1A-202ENST00000535997 SLC50A1Q9BRV3 221 aa12.4□□□□□ -0.42
CHMP1A-202ENST00000535997 HIVEP3Q5T1R4 2406 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 CACNA1BQ00975 2339 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 COX8AP10176 69 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 TP73-AS1Q9UF72 201 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 CENPVL3A0A0U1RRI6 287 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 CCL25O15444 150 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 NCR2O95944 276 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 HBDP02042 147 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 PPBPP02775 128 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 SFTPCP11686 197 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 BVES-AS1Q5T3Y7 98 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 Q6ZVH6 145 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 UBTD1Q9HAC8 227 aa12.39□□□□□ -0.43
CHMP1A-202ENST00000535997 TRBV7-1A0A0A6YYK4 115 aa12.38□□□□□ -0.43
CHMP1A-202ENST00000535997 CLPSL1A2RUU4 121 aa12.38□□□□□ -0.43
CHMP1A-202ENST00000535997 LGALS9BQ3B8N2 356 aa12.38□□□□□ -0.43
CHMP1A-202ENST00000535997 LINC01559Q495D7 138 aa12.38□□□□□ -0.43
CHMP1A-202ENST00000535997 LGALS9CQ6DKI2 356 aa12.38□□□□□ -0.43
CHMP1A-202ENST00000535997 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.38□□□□□ -0.43
CHMP1A-202ENST00000535997 CCDC140Q96MF4 163 aa12.38□□□□□ -0.43
CHMP1A-202ENST00000535997 PSMG3-AS1Q96PY0 264 aa12.38□□□□□ -0.43
CHMP1A-202ENST00000535997 NPFFR1Q9GZQ6 430 aa12.38□□□□□ -0.43
CHMP1A-202ENST00000535997 PRAC2D3DTV9 90 aa12.37□□□□□ -0.43
CHMP1A-202ENST00000535997 HIST1H1AQ02539 215 aaPredicted RBP12.37□□□□□ -0.43
CHMP1A-202ENST00000535997 ERCC8Q13216 396 aa12.37□□□□□ -0.43
CHMP1A-202ENST00000535997 CLEC19AQ6UXS0 136 aa12.37□□□□□ -0.43
CHMP1A-202ENST00000535997 OR8A1Q8NGG7 326 aa12.37□□□□□ -0.43
CHMP1A-202ENST00000535997 EEF1AKMT3Q96AZ1 226 aa12.37□□□□□ -0.43
CHMP1A-202ENST00000535997 G3V318 75 aa12.37□□□□□ -0.43
CHMP1A-202ENST00000535997 BPESC1Q9GZL8 116 aa12.37□□□□□ -0.43
CHMP1A-202ENST00000535997 LINC01548A6NM66 108 aa12.36□□□□□ -0.43
CHMP1A-202ENST00000535997 NPFFO15130 113 aa12.36□□□□□ -0.43
CHMP1A-202ENST00000535997 NPYP01303 97 aa12.36□□□□□ -0.43
CHMP1A-202ENST00000535997 PIP4P2Q8N4L2 257 aa12.36□□□□□ -0.43
CHMP1A-202ENST00000535997 DEFB125Q8N687 156 aa12.36□□□□□ -0.43
CHMP1A-202ENST00000535997 RNF182Q8N6D2 247 aa12.36□□□□□ -0.43
CHMP1A-202ENST00000535997 OR1N2Q8NGR9 330 aa12.36□□□□□ -0.43
CHMP1A-202ENST00000535997 METTL26Q96S19 204 aa12.36□□□□□ -0.43
CHMP1A-202ENST00000535997 MSRB1Q9NZV6 116 aa12.36□□□□□ -0.43
CHMP1A-202ENST00000535997 RNF185Q96GF1 192 aa12.35□□□□□ -0.43
CHMP1A-202ENST00000535997 ATP6V0BQ99437 205 aa12.35□□□□□ -0.43
CHMP1A-202ENST00000535997 SMKR1H3BMG3 65 aa12.35□□□□□ -0.43
CHMP1A-202ENST00000535997 PRSS57Q6UWY2 283 aa12.35□□□□□ -0.43
CHMP1A-202ENST00000535997 C5orf56Q8N8D9 126 aa12.35□□□□□ -0.43
CHMP1A-202ENST00000535997 MRPL53Q96EL3 112 aaKnown RBP12.35□□□□□ -0.43
CHMP1A-202ENST00000535997 AGPAT4-IT1Q9H0P7 198 aa12.35□□□□□ -0.43
CHMP1A-202ENST00000535997 HIF1ANQ9NWT6 349 aa12.35□□□□□ -0.43
CHMP1A-202ENST00000535997 LINC01546A6NGU7 62 aa12.34□□□□□ -0.43
CHMP1A-202ENST00000535997 NHLH1Q02575 133 aa12.34□□□□□ -0.43
CHMP1A-202ENST00000535997 IL17RELQ6ZVW7 336 aa12.34□□□□□ -0.43
CHMP1A-202ENST00000535997 IFI27L1Q96BM0 104 aa12.34□□□□□ -0.43
CHMP1A-202ENST00000535997 CBY1Q9Y3M2 126 aa12.34□□□□□ -0.43
CHMP1A-202ENST00000535997 U3KQE9 123 aa12.34□□□□□ -0.43
CHMP1A-202ENST00000535997 IGHV3-66A0A0C4DH42 116 aa12.34□□□□□ -0.43
CHMP1A-202ENST00000535997 ATP5G2Q06055 141 aa12.34□□□□□ -0.43
CHMP1A-202ENST00000535997 MAP1LC3AQ9H492 121 aa12.34□□□□□ -0.43
CHMP1A-202ENST00000535997 TAX1BP3O14907 124 aa12.33□□□□□ -0.44
CHMP1A-202ENST00000535997 AKAP6Q13023 2319 aa12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 TRAV8-2A0A0B4J237 113 aa12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 CD5LO43866 347 aa12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 CACNG7P62955 275 aa12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 TMEM78Q5T7P6 136 aa12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 C2orf91Q6ZV80 131 aa12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 NXT2Q9NPJ8 142 aaKnown RBP12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 IGKV3D-20A0A0C4DH25 116 aa12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 FXYD7P58549 80 aa12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 C9orf47Q6ZRZ4 202 aa12.32□□□□□ -0.44
CHMP1A-202ENST00000535997 IGHV3OR16-13A0A075B7E8 117 aa12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 IGHV3-74A0A0B4J1X5 117 aa12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 VAMP3Q15836 100 aa12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 C8orf86Q6ZUL3 223 aa12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 SPTBN4Q9H254 2564 aa12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 TNFRSF6BO95407 300 aa12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 FGF6P10767 208 aa12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 ANKRD39Q53RE8 183 aa12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 ITLN2Q8WWU7 325 aaPredicted RBP12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 COL25A1Q9BXS0 654 aaPredicted RBP12.31□□□□□ -0.44
CHMP1A-202ENST00000535997 TRAV41A0A0B4J266 112 aa12.3□□□□□ -0.44
CHMP1A-202ENST00000535997 FAM223BA6NKX1 122 aa12.3□□□□□ -0.44
CHMP1A-202ENST00000535997 FAM223AQ8IWN6 122 aa12.3□□□□□ -0.44
CHMP1A-202ENST00000535997 BOD1L2Q8IYS8 172 aa12.3□□□□□ -0.44
CHMP1A-202ENST00000535997 MOB4Q9Y3A3 225 aa12.3□□□□□ -0.44
CHMP1A-202ENST00000535997 FCER1GP30273 86 aa12.3□□□□□ -0.44
CHMP1A-202ENST00000535997 LY6DQ14210 128 aa12.3□□□□□ -0.44
CHMP1A-202ENST00000535997 C11orf21Q9P2W6 132 aa12.3□□□□□ -0.44
CHMP1A-202ENST00000535997 IGHV3-49A0A0A0MS15 119 aa12.29□□□□□ -0.44
CHMP1A-202ENST00000535997 ZNF207O43670 478 aaKnown RBP12.29□□□□□ -0.44
CHMP1A-202ENST00000535997 PPIFP30405 207 aaKnown RBP12.29□□□□□ -0.44
CHMP1A-202ENST00000535997 CRIP2P52943 208 aaPredicted RBP12.29□□□□□ -0.44
CHMP1A-202ENST00000535997 TMEM97Q5BJF2 176 aa12.29□□□□□ -0.44
CHMP1A-202ENST00000535997 C19orf54Q5BKX5 351 aa12.29□□□□□ -0.44
CHMP1A-202ENST00000535997 PSMG4Q5JS54 123 aa12.29□□□□□ -0.44
CHMP1A-202ENST00000535997 SIVA1O15304 175 aa12.28□□□□□ -0.44
CHMP1A-202ENST00000535997 SNAI2O43623 268 aa12.28□□□□□ -0.44
CHMP1A-202ENST00000535997 SEC11AP67812 179 aa12.28□□□□□ -0.44
CHMP1A-202ENST00000535997 K7EP13 123 aa12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 173 ms