RNA–Protein interactions for RNA: ENST00000530790.5

VPS28-211, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 561 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-211ENST00000530790 LINC00477Q96M19 166 aa9.38□□□□□ -0.91
VPS28-211ENST00000530790 IGKV2-40A0A087WW87 121 aaPredicted RBP9.37□□□□□ -0.91
VPS28-211ENST00000530790 KLLNB2CW77 178 aa9.37□□□□□ -0.91
VPS28-211ENST00000530790 PTTG1O95997 202 aa9.37□□□□□ -0.91
VPS28-211ENST00000530790 IGKV2D-40P01614 121 aaPredicted RBP9.37□□□□□ -0.91
VPS28-211ENST00000530790 UBE2L3P68036 154 aaKnown RBP9.37□□□□□ -0.91
VPS28-211ENST00000530790 LINC00336Q6ZUF6 198 aa9.37□□□□□ -0.91
VPS28-211ENST00000530790 FXYD5Q96DB9 178 aa9.37□□□□□ -0.91
VPS28-211ENST00000530790 PHYHIPLQ96FC7 376 aa9.37□□□□□ -0.91
VPS28-211ENST00000530790 ATG101Q9BSB4 218 aa9.37□□□□□ -0.91
VPS28-211ENST00000530790 ALG5Q9Y673 324 aa9.37□□□□□ -0.91
VPS28-211ENST00000530790 IGLV2-18A0A075B6J9 118 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 NUDT3O95989 172 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 TAS2R45P59539 299 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 BTN1A1Q13410 526 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 LGALS9BQ3B8N2 356 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 KHDC3LQ587J8 217 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 C9orf47Q6ZRZ4 202 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 ZNF680Q8NEM1 530 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 RNF141Q8WVD5 230 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 FAM19A4Q96LR4 140 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 AGPAT4-IT1Q9H0P7 198 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 DNAH10Q8IVF4 4471 aa9.36□□□□□ -0.91
VPS28-211ENST00000530790 GAGE12BA1L429 117 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 GAGE7O76087 117 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 GPX1P07203 203 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 GAGE12FP0CL80 117 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 GAGE12GP0CL81 117 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 GAGE12IP0CL82 117 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 CRISP2P16562 243 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 CSN1S1P47710 185 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 FAM3BP58499 235 aaPredicted RBP9.35□□□□□ -0.91
VPS28-211ENST00000530790 LINC00612Q8N6U2 182 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 HECTD4Q9Y4D8 3996 aa9.35□□□□□ -0.91
VPS28-211ENST00000530790 NMBP08949 121 aa9.34□□□□□ -0.91
VPS28-211ENST00000530790 RNASE4P34096 147 aaKnown RBP9.34□□□□□ -0.91
VPS28-211ENST00000530790 CD300CQ08708 224 aa9.34□□□□□ -0.91
VPS28-211ENST00000530790 LYPD1Q8N2G4 141 aa9.34□□□□□ -0.91
VPS28-211ENST00000530790 VGLL1Q99990 258 aa9.34□□□□□ -0.91
VPS28-211ENST00000530790 LINC00467Q9BRT7 94 aa9.34□□□□□ -0.91
VPS28-211ENST00000530790 Q9H3A6 140 aa9.34□□□□□ -0.91
VPS28-211ENST00000530790 ZNF492Q9P255 531 aa9.34□□□□□ -0.91
VPS28-211ENST00000530790 ZNF324O75467 553 aaPredicted RBP9.33□□□□□ -0.92
VPS28-211ENST00000530790 ZNF138P52744 262 aa9.33□□□□□ -0.92
VPS28-211ENST00000530790 RANP62826 216 aaKnown RBP9.33□□□□□ -0.92
VPS28-211ENST00000530790 DAZ2Q13117 558 aaKnown RBP9.33□□□□□ -0.92
VPS28-211ENST00000530790 OR5I1Q13606 314 aa9.33□□□□□ -0.92
VPS28-211ENST00000530790 ACOT6Q3I5F7 207 aaPredicted RBP9.33□□□□□ -0.92
VPS28-211ENST00000530790 EIF4E3Q8N5X7 224 aaKnown RBP9.33□□□□□ -0.92
VPS28-211ENST00000530790 ZFAND2AQ8N6M9 145 aa9.33□□□□□ -0.92
VPS28-211ENST00000530790 Q8TAT8 98 aa9.33□□□□□ -0.92
VPS28-211ENST00000530790 ZNF503Q96F45 646 aa9.33□□□□□ -0.92
VPS28-211ENST00000530790 MED28Q9H204 178 aa9.33□□□□□ -0.92
VPS28-211ENST00000530790 WFDC1Q9HC57 220 aa9.33□□□□□ -0.92
VPS28-211ENST00000530790 TRBV7-9A0A0J9YWB2 115 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 RBAKDNA6NC62 111 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 RGS13O14921 159 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 M6PRP20645 277 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 CCL18P55774 89 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 ZNF266Q14584 549 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 ANXA2RQ3ZCQ2 193 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 SOHLH1Q5JUK2 328 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 PRR9Q5T870 116 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 Q6ZR54 194 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 C11orf72Q8NBR9 251 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 GNPNAT1Q96EK6 184 aaPredicted RBP9.32□□□□□ -0.92
VPS28-211ENST00000530790 TMPRSS5Q9H3S3 457 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 GSN-AS1Q9NRJ2 163 aa9.32□□□□□ -0.92
VPS28-211ENST00000530790 TRGV2A0A075B6R0 118 aa9.31□□□□□ -0.92
VPS28-211ENST00000530790 TRAV26-1A0A087WT03 109 aa9.31□□□□□ -0.92
VPS28-211ENST00000530790 A0A1W2PPV4 95 aa9.31□□□□□ -0.92
VPS28-211ENST00000530790 PRSS29PA6NIE9 313 aa9.31□□□□□ -0.92
VPS28-211ENST00000530790 RTL8CO15255 209 aa9.31□□□□□ -0.92
VPS28-211ENST00000530790 TCL1AP56279 114 aa9.31□□□□□ -0.92
VPS28-211ENST00000530790 PQLC2Q6ZP29 291 aa9.31□□□□□ -0.92
VPS28-211ENST00000530790 Q6ZTI0 123 aa9.31□□□□□ -0.92
VPS28-211ENST00000530790 ARPC5LQ9BPX5 153 aa9.31□□□□□ -0.92
VPS28-211ENST00000530790 TRGV1A0A0A0MS02 117 aa9.3□□□□□ -0.92
VPS28-211ENST00000530790 A0A0J9YY99 117 aa9.3□□□□□ -0.92
VPS28-211ENST00000530790 EIF3GO75821 320 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS28-211ENST00000530790 RAB2AP61019 212 aa9.3□□□□□ -0.92
VPS28-211ENST00000530790 FAM74A1Q5RGS3 127 aa9.3□□□□□ -0.92
VPS28-211ENST00000530790 IBA57Q5T440 356 aaKnown RBP9.3□□□□□ -0.92
VPS28-211ENST00000530790 CMTM2Q8TAZ6 248 aa9.3□□□□□ -0.92
VPS28-211ENST00000530790 RXFP4Q8TDU9 374 aa9.3□□□□□ -0.92
VPS28-211ENST00000530790 HYLS1Q96M11 299 aa9.3□□□□□ -0.92
VPS28-211ENST00000530790 AQP10Q96PS8 301 aa9.3□□□□□ -0.92
VPS28-211ENST00000530790 IGHV1OR15-1A0A075B7D0 117 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 DIRC3C9JPN6 131 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 HOXA5P20719 270 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 C1orf134Q5TEV5 83 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 HSD17B11Q8NBQ5 300 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 OR10G4Q8NGN3 311 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 OR10G9Q8NGN4 311 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 OR10G7Q8NGN6 311 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 ZNRF2Q8NHG8 242 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 ASB13Q8WXK3 278 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 C18orf15Q96N68 181 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 OTORQ9NRC9 128 aa9.29□□□□□ -0.92
VPS28-211ENST00000530790 RPH3ALQ9UNE2 315 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 104.6 ms