RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 C1orf195Q5TG92 126 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 TMEM200BQ69YZ2 307 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 ZNF497Q6ZNH5 498 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 Q86TA4 180 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 LINC00643Q86TS7 51 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 ZNF441Q8N8Z8 693 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 FGFBP3Q8TAT2 258 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 C9orf85Q96MD7 179 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 PRO1854Q9UHT4 67 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 LINC00527Q9UJ94 153 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 KLF13Q9Y2Y9 288 aaPredicted RBP4.55□□□□□ -1.68
CD44-225ENST00000527326 KLK5Q9Y337 293 aaPredicted RBP4.55□□□□□ -1.68
CD44-225ENST00000527326 REV3LO60673 3130 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 XIRP2A4UGR9 3374 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 COL5A1P20908 1838 aaPredicted RBP4.55□□□□□ -1.68
CD44-225ENST00000527326 WDFY4Q6ZS81 3184 aa4.55□□□□□ -1.68
CD44-225ENST00000527326 CACNA1IQ9P0X4 2223 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 TRAV40A0A0B4J280 105 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 PGPA6NDG6 321 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 OVOL3O00110 214 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 MRPS12O15235 138 aaKnown RBP4.54□□□□□ -1.68
CD44-225ENST00000527326 ENSAO43768 121 aaKnown RBP4.54□□□□□ -1.68
CD44-225ENST00000527326 COX7A2P2O60397 106 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 COX6A1P12074 109 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 SLC25A16P16260 332 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 EDN2P20800 178 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 COL8A2P25067 703 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 CKS2P33552 79 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 PFN2P35080 140 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 LEPP41159 167 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 PCBD1P61457 104 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 C19orf54Q5BKX5 351 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 HES3Q5TGS1 186 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 LINC00322Q6ZN03 302 aaPredicted RBP4.54□□□□□ -1.68
CD44-225ENST00000527326 AAED1Q7RTV5 226 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 RPS19BP1Q86WX3 136 aaKnown RBP4.54□□□□□ -1.68
CD44-225ENST00000527326 PRIMA1Q86XR5 153 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 FXYD5Q96DB9 178 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 C2orf48Q96LS8 159 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 SHANK2-AS3Q9BTD1 123 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 AGPAT4-IT1Q9H0P7 198 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 DKK4Q9UBT3 224 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 DNAH12Q6ZR08 3092 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 USP34Q70CQ2 3546 aa4.54□□□□□ -1.68
CD44-225ENST00000527326 MUC22E2RYF6 1773 aaPredicted RBP4.53□□□□□ -1.68
CD44-225ENST00000527326 A0A0B4J2C4 111 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 A0A0G2JNJ9 132 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 TMEM30CPA0ZSE6 113 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 C15orf61A6NNL5 157 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 F8VRH5 84 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 LY6LH3BQJ8 138 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 H7C1H1 209 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 J3QQQ9 107 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 TCRAP04437 139 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 CCL11P51671 97 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 LOXL3P58215 753 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 BRWD1-AS2P59051 145 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 HIST1H4AP62805 103 aaKnown RBP4.53□□□□□ -1.68
CD44-225ENST00000527326 CCL8P80075 99 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 ZNF672Q499Z4 452 aaPredicted RBP4.53□□□□□ -1.68
CD44-225ENST00000527326 MRPL51Q4U2R6 128 aaKnown RBP4.53□□□□□ -1.68
CD44-225ENST00000527326 LY6G5CQ5SRR4 150 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 ASPHD1Q5U4P2 390 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 C10orf113Q5VZT2 155 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 SCGB1D4Q6XE38 83 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 MDP1Q86V88 176 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 Q8IYB0 196 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 Q8N8P6 123 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 SRSF12Q8WXF0 261 aaKnown RBP4.53□□□□□ -1.68
CD44-225ENST00000527326 C8orf49Q96NF6 230 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 MRPL35Q9NZE8 188 aaKnown RBP4.53□□□□□ -1.68
CD44-225ENST00000527326 Q9UFV3 132 aa4.53□□□□□ -1.68
CD44-225ENST00000527326 TNRC6BQ9UPQ9 1833 aaKnown RBP4.53□□□□□ -1.68
CD44-225ENST00000527326 ZFHX4Q86UP3 3567 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 TEX49A0A1B0GTD5 131 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 hADV29S1A0JD25 119 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 ZNF815PA8K554 130 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 INS-IGF2F8WCM5 200 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 NBR2O15453 112 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 ZFAND5O76080 213 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 NDUFC2O95298 119 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 OXTP01178 125 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 HERVK_113P61574 105 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 TFF2Q03403 129 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 C2orf83Q53S99 150 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 C2orf82Q6UX34 121 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 CXCL17Q6UXB2 119 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 C5orf38Q86SI9 138 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 FAM19A4Q96LR4 140 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 OTORQ9NRC9 128 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 TP53TG1Q9Y2A0 90 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 PKIGQ9Y2B9 76 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 PTPRBP23467 1997 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 SNRNP200O75643 2136 aaKnown RBP4.52□□□□□ -1.69
CD44-225ENST00000527326 SPTBN4Q9H254 2564 aa4.52□□□□□ -1.69
CD44-225ENST00000527326 CFAP54Q96N23 3096 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 IGKV3D-11A0A0A0MRZ8 115 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 IGLV3-32A0A0A0MS00 114 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.51□□□□□ -1.69
CD44-225ENST00000527326 J3QT63 122 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms