RNA–Protein interactions for RNA: ENST00000515847.1

LIMCH1-222, Transcript of LIM and calponin homology domains 1, human

TSL 4

Gene LIMCH1, Length 490 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LIMCH1-222	ENST00000515847	IL17D	Q8TAD2	202 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	MBD3L1	Q8WWY6	194 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	HIST1H2BA	Q96A08	127 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ASCL2	Q99929	193 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ATG101	Q9BSB4	218 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	TMEM208	Q9BTX3	173 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	DNAH7	Q8WXX0	4024 aa		5.71	□□□□□ -1.5
LIMCH1-222	ENST00000515847	NBEAL2	Q6ZNJ1	2754 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	TENM3	Q9P273	2699 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	TRAV1-1	A0A0B4J248	108 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	TMEM189	A5PLL7	270 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	PGP	A6NDG6	321 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847		A8MTW9	85 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	NPIPB6	E9PJ23	425 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847		H3BTX0	84 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	NDUFB4	O95168	129 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	S100A9	P06702	114 aa	Known RBP	5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	MIF	P14174	115 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	DEFB135	Q30KP9	77 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	SBSPON	Q8IVN8	264 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	CYB561D1	Q8N8Q1	229 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	C20orf173	Q96LM9	149 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	IGF2BP2-AS1	Q96M15	143 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	CITED4	Q96RK1	184 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	NIPSNAP3B	Q9BS92	247 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847		U3KQK5	164 aa		5.7	□□□□□ -1.5
LIMCH1-222	ENST00000515847	STAB2	Q8WWQ8	2551 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	SMIM9	A6NGZ8	99 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	DIRC3	C9JPN6	131 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	IGKV3-20	P01619	116 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ZNF138	P52744	262 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	RAB14	P61106	215 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	UBE2G1	P62253	170 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ZNF124	Q15973	351 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	CST9LP1	Q5W188	147 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	C9orf47	Q6ZRZ4	202 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	EXOC3-AS1	Q8N2X6	119 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	TMEM75	Q8N9X5	138 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	RNF183	Q96D59	192 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ZNF503	Q96F45	646 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	C17orf77	Q96MU5	243 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	RARRES2	Q99969	163 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	RPH3AL	Q9UNE2	315 aa		5.69	□□□□□ -1.5
LIMCH1-222	ENST00000515847	FAM74A7	A6NL05	159 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847		F6UB75	175 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847		H7BYZ3	331 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847		M0R3E3	92 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	PEX7	O00628	323 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	PDE6D	O43924	150 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	TCRA	P04437	139 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	SNRPC	P09234	159 aa	Known RBP	5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	CT45A10	P0DMU9	189 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	AKR1C3	P42330	323 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	NKX2-5	P52952	324 aa	Predicted RBP	5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	FGF8	P55075	233 aa	Predicted RBP	5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	SUMO1	P63165	101 aa	Known RBP	5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	CD300C	Q08708	224 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ZNF726P1	Q15940	193 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	SAPCD1	Q5SSQ6	148 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	IGFL4	Q6B9Z1	124 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ALKAL2	Q6UX46	152 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	GOLT1A	Q6ZVE7	132 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	CCDC28A	Q8IWP9	274 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	FMC1	Q96HJ9	113 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	NEU1	Q99519	415 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	C11orf68	Q9H3H3	251 aa	Known RBP	5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	GNG13	Q9P2W3	67 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	XCL2	Q9UBD3	114 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	EPDR1	Q9UM22	224 aa		5.68	□□□□□ -1.5
LIMCH1-222	ENST00000515847	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	GGTLC3	B5MD39	225 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	C11orf94	C9JXX5	98 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	IGKV2D-40	P01614	121 aa	Predicted RBP	5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	GPX1	P07203	203 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	CRISP2	P16562	243 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	HLA-DMB	P28068	263 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	TAS2R60	P59551	318 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	UBE2G2	P60604	165 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	PMS2P11	Q13670	270 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	SPINK13	Q1W4C9	94 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	RRN3P1	Q2M238	152 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	GDF5OS	Q5U4N7	250 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ZNF680	Q8NEM1	530 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	OR11H2	Q8NH07	326 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	BIN3	Q9NQY0	253 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ZNF492	Q9P255	531 aa		5.67	□□□□□ -1.5
LIMCH1-222	ENST00000515847	C7orf71	A4D174	169 aa		5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ZNF705F	A8MVS1	300 aa	Predicted RBP	5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847		M0R2Z0	102 aa		5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	NDUFS6	O75380	124 aa	Known RBP	5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	BCL2	P10415	239 aa		5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	FLI1	Q01543	452 aa	Predicted RBP	5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	MEF2B	Q02080	365 aa	Predicted RBP	5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	TEX261	Q6UWH6	196 aa		5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	AMTN	Q6UX39	209 aa		5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	ZNF493	Q6ZR52	646 aa		5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	SSX7	Q7RTT5	188 aa		5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	SMIM12	Q96EX1	92 aa		5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	C16orf74	Q96GX8	76 aa		5.66	□□□□□ -1.5
LIMCH1-222	ENST00000515847	PYGO2	Q9BRQ0	406 aa		5.66	□□□□□ -1.5

Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms