RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 GNPNAT1Q96EK6 184 aaPredicted RBP12.22□□□□□ -0.45
DDX41-217ENST00000515562 ZNF503Q96F45 646 aa12.22□□□□□ -0.45
DDX41-217ENST00000515562 FAM167A-AS1Q96KT0 104 aa12.22□□□□□ -0.45
DDX41-217ENST00000515562 FAM19A4Q96LR4 140 aa12.22□□□□□ -0.45
DDX41-217ENST00000515562 WDR61Q9GZS3 305 aaKnown RBP12.22□□□□□ -0.45
DDX41-217ENST00000515562 TRAV26-1A0A087WT03 109 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 GAGE12BA1L429 117 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 H0YIZ8 118 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 GAGE7O76087 117 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 GAGE12FP0CL80 117 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 GAGE12GP0CL81 117 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 GAGE12IP0CL82 117 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 IFITM3Q01628 133 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 OR5I1Q13606 314 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 ICAM4Q14773 271 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 TMEM78Q5T7P6 136 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 C9orf47Q6ZRZ4 202 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 MIR17HGQ75NE6 70 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 LINC00467Q9BRT7 94 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 MARVELD1Q9BSK0 173 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 AGPAT4-IT1Q9H0P7 198 aa12.21□□□□□ -0.45
DDX41-217ENST00000515562 NBDYA0A0U1RRE5 68 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 A6NHS1 94 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 NMBP08949 121 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 NBEAP1P0C6P0 100 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 MED14OSP0DP75 135 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 CRISP2P16562 243 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 H2BFSP57053 126 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 DEFA1P59665 94 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 DEFA3P59666 94 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 FAM122CQ6P4D5 195 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 RXFP4Q8TDU9 374 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 PPP1R1CQ8WVI7 109 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 ATP5SQ99766 215 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 OR51M1Q9H341 326 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 LINC00588Q9Y4M8 146 aa12.2□□□□□ -0.46
DDX41-217ENST00000515562 IGKV2-40A0A087WW87 121 aaPredicted RBP12.19□□□□□ -0.46
DDX41-217ENST00000515562 H3BNG1 76 aa12.19□□□□□ -0.46
DDX41-217ENST00000515562 IGKV2D-40P01614 121 aaPredicted RBP12.19□□□□□ -0.46
DDX41-217ENST00000515562 GPX1P07203 203 aa12.19□□□□□ -0.46
DDX41-217ENST00000515562 BTN1A1Q13410 526 aa12.19□□□□□ -0.46
DDX41-217ENST00000515562 ANXA2RQ3ZCQ2 193 aa12.19□□□□□ -0.46
DDX41-217ENST00000515562 SSX7Q7RTT5 188 aa12.19□□□□□ -0.46
DDX41-217ENST00000515562 EIF4E3Q8N5X7 224 aaKnown RBP12.19□□□□□ -0.46
DDX41-217ENST00000515562 PAXXQ9BUH6 204 aa12.19□□□□□ -0.46
DDX41-217ENST00000515562 FUT9Q9Y231 359 aa12.19□□□□□ -0.46
DDX41-217ENST00000515562 SSNA1O43805 119 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 ZNF324O75467 553 aaPredicted RBP12.18□□□□□ -0.46
DDX41-217ENST00000515562 OR10J4P0C629 311 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 HOXA5P20719 270 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 RNASE4P34096 147 aaKnown RBP12.18□□□□□ -0.46
DDX41-217ENST00000515562 CD300CQ08708 224 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 Q6ZTI0 123 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 C11orf72Q8NBR9 251 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 FXYD5Q96DB9 178 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 C18orf15Q96N68 181 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 TMPRSS5Q9H3S3 457 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 GSN-AS1Q9NRJ2 163 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 PKD1P98161 4303 aa12.18□□□□□ -0.46
DDX41-217ENST00000515562 TRGV2A0A075B6R0 118 aa12.17□□□□□ -0.46
DDX41-217ENST00000515562 A0A0J9YY99 117 aa12.17□□□□□ -0.46
DDX41-217ENST00000515562 OR7C2O60412 319 aa12.17□□□□□ -0.46
DDX41-217ENST00000515562 C6orf223Q8N319 242 aa12.17□□□□□ -0.46
DDX41-217ENST00000515562 HSPB11Q9Y547 144 aa12.17□□□□□ -0.46
DDX41-217ENST00000515562 TRBV7-9A0A0J9YWB2 115 aa12.16□□□□□ -0.46
DDX41-217ENST00000515562 RGS13O14921 159 aa12.16□□□□□ -0.46
DDX41-217ENST00000515562 MPC2O95563 127 aa12.16□□□□□ -0.46
DDX41-217ENST00000515562 CSN1S1P47710 185 aa12.16□□□□□ -0.46
DDX41-217ENST00000515562 IBA57Q5T440 356 aaKnown RBP12.16□□□□□ -0.46
DDX41-217ENST00000515562 LYPD1Q8N2G4 141 aa12.16□□□□□ -0.46
DDX41-217ENST00000515562 ZFAND2AQ8N6M9 145 aa12.16□□□□□ -0.46
DDX41-217ENST00000515562 PHYHIPLQ96FC7 376 aa12.16□□□□□ -0.46
DDX41-217ENST00000515562 VGLL1Q99990 258 aa12.16□□□□□ -0.46
DDX41-217ENST00000515562 ZNF492Q9P255 531 aa12.16□□□□□ -0.46
DDX41-217ENST00000515562 DNAH11Q96DT5 4516 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 TRGV1A0A0A0MS02 117 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 IFNA5P01569 189 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 ZNF138P52744 262 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 TCL1AP56279 114 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 TAS2R45P59539 299 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 UBE2L3P68036 154 aaKnown RBP12.15□□□□□ -0.46
DDX41-217ENST00000515562 KHDC3LQ587J8 217 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 TTC32Q5I0X7 151 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 FFAR4Q5NUL3 377 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 SCGB1C1Q8TD33 95 aa12.15□□□□□ -0.46
DDX41-217ENST00000515562 RBAKDNA6NC62 111 aa12.14□□□□□ -0.47
DDX41-217ENST00000515562 RPL12P30050 165 aaKnown RBP12.14□□□□□ -0.47
DDX41-217ENST00000515562 ARPC5LQ9BPX5 153 aa12.14□□□□□ -0.47
DDX41-217ENST00000515562 UPK3BQ9BT76 320 aa12.14□□□□□ -0.47
DDX41-217ENST00000515562 Q9H8V8 135 aa12.14□□□□□ -0.47
DDX41-217ENST00000515562 PCLOQ9Y6V0 5065 aa12.14□□□□□ -0.47
DDX41-217ENST00000515562 IGHV1OR15-1A0A075B7D0 117 aa12.13□□□□□ -0.47
DDX41-217ENST00000515562 SPINK4O60575 86 aa12.13□□□□□ -0.47
DDX41-217ENST00000515562 RANP62826 216 aaKnown RBP12.13□□□□□ -0.47
DDX41-217ENST00000515562 PRR9Q5T870 116 aa12.13□□□□□ -0.47
DDX41-217ENST00000515562 Q8TAT8 98 aa12.13□□□□□ -0.47
DDX41-217ENST00000515562 Q9H3A6 140 aa12.13□□□□□ -0.47
DDX41-217ENST00000515562 MBD2Q9UBB5 411 aa12.13□□□□□ -0.47
DDX41-217ENST00000515562 DYNC1H1Q14204 4646 aaKnown RBP12.13□□□□□ -0.47
DDX41-217ENST00000515562 TNP2Q05952 138 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms