RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 RPL22P35268 128 aaKnown RBP2.18□□□□□ -2.06
NUP54-215ENST00000514313 ZCCHC23Q6ZST2 131 aa2.18□□□□□ -2.06
NUP54-215ENST00000514313 NABP2Q9BQ15 211 aa2.18□□□□□ -2.06
NUP54-215ENST00000514313 TCOF1Q13428 1488 aaKnown RBP2.18□□□□□ -2.06
NUP54-215ENST00000514313 IGLV3-32A0A0A0MS00 114 aa2.17□□□□□ -2.06
NUP54-215ENST00000514313 DEGS1O15121 323 aa2.17□□□□□ -2.06
NUP54-215ENST00000514313 SRP9P49458 86 aaKnown RBP2.17□□□□□ -2.06
NUP54-215ENST00000514313 NAT14Q8WUY8 206 aa2.17□□□□□ -2.06
NUP54-215ENST00000514313 ZFC3H1O60293 1989 aaKnown RBP2.17□□□□□ -2.06
NUP54-215ENST00000514313 CHD3Q12873 2000 aaKnown RBP2.17□□□□□ -2.06
NUP54-215ENST00000514313 FAM135BQ49AJ0 1406 aa2.17□□□□□ -2.06
NUP54-215ENST00000514313 TRAV36DV7A0A075B6V5 113 aa2.16□□□□□ -2.06
NUP54-215ENST00000514313 PPYP01298 95 aa2.16□□□□□ -2.06
NUP54-215ENST00000514313 OR8B8Q15620 311 aa2.16□□□□□ -2.06
NUP54-215ENST00000514313 OR5AK2Q8NH90 309 aa2.16□□□□□ -2.06
NUP54-215ENST00000514313 WFDC10AQ9H1F0 79 aa2.16□□□□□ -2.06
NUP54-215ENST00000514313 SIP14410 1827 aa2.15□□□□□ -2.06
NUP54-215ENST00000514313 MYO18AQ92614 2054 aaKnown RBP2.15□□□□□ -2.07
NUP54-215ENST00000514313 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.15□□□□□ -2.07
NUP54-215ENST00000514313 C3orf85A0A1B0GTC6 90 aa2.15□□□□□ -2.07
NUP54-215ENST00000514313 JMJD7-PLA2G4BH0Y9G9 81 aa2.15□□□□□ -2.07
NUP54-215ENST00000514313 IGHV3-33P01772 117 aa2.15□□□□□ -2.07
NUP54-215ENST00000514313 SAA1P0DJI8 122 aaPredicted RBP2.15□□□□□ -2.07
NUP54-215ENST00000514313 TANC2Q9HCD6 1990 aa2.15□□□□□ -2.07
NUP54-215ENST00000514313 FER1L6Q2WGJ9 1857 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 FLG2Q5D862 2391 aaPredicted RBP2.14□□□□□ -2.07
NUP54-215ENST00000514313 A0A1B0GX51 115 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 SDC4P31431 198 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 Q5XG85 94 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 OR8I2Q8N0Y5 310 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 PLPP5Q8NEB5 264 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 OR5A2Q8NGI9 324 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 OR51A4Q8NGJ6 313 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 AMELYQ99218 206 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 AIF1LQ9BQI0 150 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 BATF3Q9NR55 127 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 SPANXA1Q9NS26 97 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 JPT1Q9UK76 154 aa2.14□□□□□ -2.07
NUP54-215ENST00000514313 SLC25A4P12235 298 aa2.13□□□□□ -2.07
NUP54-215ENST00000514313 OVOS2A0A0G2JMS6 1433 aa2.12□□□□□ -2.07
NUP54-215ENST00000514313 SCGB1A1P11684 91 aa2.12□□□□□ -2.07
NUP54-215ENST00000514313 BLCAPP62952 87 aa2.12□□□□□ -2.07
NUP54-215ENST00000514313 DEFB115Q30KQ5 88 aa2.12□□□□□ -2.07
NUP54-215ENST00000514313 GLIPR1L1Q6UWM5 242 aa2.12□□□□□ -2.07
NUP54-215ENST00000514313 CASC2Q6XLA1 102 aa2.12□□□□□ -2.07
NUP54-215ENST00000514313 ARAP1Q96P48 1450 aa2.12□□□□□ -2.07
NUP54-215ENST00000514313 LOC107984156A0A0G2JMH3 177 aa2.11□□□□□ -2.07
NUP54-215ENST00000514313 LOC105371267A0A1B0GV96 52 aa2.11□□□□□ -2.07
NUP54-215ENST00000514313 LOC107986453A0A1B0GWG9 222 aa2.11□□□□□ -2.07
NUP54-215ENST00000514313 HBDP02042 147 aa2.11□□□□□ -2.07
NUP54-215ENST00000514313 ARL17AQ8IVW1 177 aa2.11□□□□□ -2.07
NUP54-215ENST00000514313 XIRP1Q702N8 1843 aaKnown RBP2.1□□□□□ -2.07
NUP54-215ENST00000514313 TRAV23DV6A0A075B6W5 121 aa2.1□□□□□ -2.07
NUP54-215ENST00000514313 DPM2O94777 84 aa2.1□□□□□ -2.07
NUP54-215ENST00000514313 TNFSF15O95150 251 aa2.1□□□□□ -2.07
NUP54-215ENST00000514313 NEDD8Q15843 81 aa2.1□□□□□ -2.07
NUP54-215ENST00000514313 MED23Q9ULK4 1368 aa2.1□□□□□ -2.07
NUP54-215ENST00000514313 NCR3O14931 201 aa2.09□□□□□ -2.07
NUP54-215ENST00000514313 MT-ND4LP03901 98 aa2.09□□□□□ -2.07
NUP54-215ENST00000514313 SLC25A5P05141 298 aaKnown RBP2.09□□□□□ -2.07
NUP54-215ENST00000514313 CIB3Q96Q77 187 aaPredicted RBP2.09□□□□□ -2.07
NUP54-215ENST00000514313 E9PCH4 1651 aa2.09□□□□□ -2.08
NUP54-215ENST00000514313 A0A1B0GW64 132 aa2.08□□□□□ -2.08
NUP54-215ENST00000514313 CMPK1P30085 196 aa2.08□□□□□ -2.08
NUP54-215ENST00000514313 ALX1Q15699 326 aa2.08□□□□□ -2.08
NUP54-215ENST00000514313 C5orf17Q8NAS9 161 aa2.08□□□□□ -2.08
NUP54-215ENST00000514313 LIMD2Q9BT23 127 aa2.08□□□□□ -2.08
NUP54-215ENST00000514313 HSPB8Q9UJY1 196 aa2.08□□□□□ -2.08
NUP54-215ENST00000514313 DSPPQ9NZW4 1301 aa2.08□□□□□ -2.08
NUP54-215ENST00000514313 SNRNP200O75643 2136 aaKnown RBP2.08□□□□□ -2.08
NUP54-215ENST00000514313 COL1A1P02452 1464 aaPredicted RBP2.07□□□□□ -2.08
NUP54-215ENST00000514313 C9JAW5 83 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 UQCRQO14949 82 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 TCRAP04437 139 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 PAEPP09466 180 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 CCL4P13236 92 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 CCDC153Q494R4 210 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 SPATA45Q537H7 98 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 SPANXCQ9NY87 97 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 HIGD1AQ9Y241 93 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 MPC1Q9Y5U8 109 aa2.07□□□□□ -2.08
NUP54-215ENST00000514313 IGLV3-1P01715 115 aa2.06□□□□□ -2.08
NUP54-215ENST00000514313 SCTP09683 121 aa2.06□□□□□ -2.08
NUP54-215ENST00000514313 LSM3P62310 102 aaKnown RBP2.06□□□□□ -2.08
NUP54-215ENST00000514313 TMEM244Q5VVB8 128 aa2.06□□□□□ -2.08
NUP54-215ENST00000514313 HELZ2Q9BYK8 2649 aaKnown RBP2.06□□□□□ -2.08
NUP54-215ENST00000514313 ERBINQ96RT1 1412 aa2.06□□□□□ -2.08
NUP54-215ENST00000514313 BORCS7-ASMTA0A0B4J1R7 106 aa2.05□□□□□ -2.08
NUP54-215ENST00000514313 ARPC5O15511 151 aa2.05□□□□□ -2.08
NUP54-215ENST00000514313 EFNA4P52798 201 aa2.05□□□□□ -2.08
NUP54-215ENST00000514313 PSPHP78330 225 aa2.05□□□□□ -2.08
NUP54-215ENST00000514313 A0A0J9YY99 117 aa2.04□□□□□ -2.08
NUP54-215ENST00000514313 TMEM189A5PLL7 270 aa2.04□□□□□ -2.08
NUP54-215ENST00000514313 CD14P08571 375 aa2.04□□□□□ -2.08
NUP54-215ENST00000514313 LINC00299Q6ZSB3 139 aa2.04□□□□□ -2.08
NUP54-215ENST00000514313 SBSPONQ8IVN8 264 aa2.04□□□□□ -2.08
NUP54-215ENST00000514313 TCTE3Q8IZS6 198 aa2.04□□□□□ -2.08
NUP54-215ENST00000514313 CALML5Q9NZT1 146 aa2.04□□□□□ -2.08
NUP54-215ENST00000514313 ROS1P08922 2347 aa2.03□□□□□ -2.08
NUP54-215ENST00000514313 TET1Q8NFU7 2136 aa2.03□□□□□ -2.08
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms