RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 GDF5OSQ5U4N7 250 aa6.65□□□□□ -1.34
LIMCH1-216ENST00000512820 IL17RELQ6ZVW7 336 aa6.65□□□□□ -1.34
LIMCH1-216ENST00000512820 PIP4P1Q86T03 277 aa6.65□□□□□ -1.34
LIMCH1-216ENST00000512820 RNASE8Q8TDE3 154 aaKnown RBP6.65□□□□□ -1.34
LIMCH1-216ENST00000512820 IGKV1D-37A0A075B6S9 117 aa6.65□□□□□ -1.34
LIMCH1-216ENST00000512820 I3L2K1 104 aa6.65□□□□□ -1.34
LIMCH1-216ENST00000512820 SMAGPQ0VAQ4 97 aa6.65□□□□□ -1.34
LIMCH1-216ENST00000512820 COL6A6A6NMZ7 2263 aa6.65□□□□□ -1.34
LIMCH1-216ENST00000512820 TTC28Q96AY4 2481 aa6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 C2orf70A6NJV1 201 aa6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 PAX2Q02962 417 aa6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 SP5Q6BEB4 398 aaPredicted RBP6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 C14orf178Q8N769 122 aaPredicted RBP6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 NDUFS7O75251 213 aa6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 LINC01545Q5VT33 79 aa6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 C9orf139Q6ZV77 190 aa6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 DYNLRB2Q8TF09 96 aa6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 DKK2Q9UBU2 259 aa6.65□□□□□ -1.35
LIMCH1-216ENST00000512820 TRBV7-1A0A0A6YYK4 115 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 K7EP13 123 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 Q8N8P6 123 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 DEFB104AQ8WTQ1 72 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 WFDC12Q8WWY7 111 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 SCRT2Q9NQ03 307 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 SRD5A1P18405 259 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 NPFFR1Q9GZQ6 430 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 DPH3P1Q9H4G8 78 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 K7EIM0 57 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 K7EP34 96 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 EGR2P11161 476 aaPredicted RBP6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 A0A1B0GXF2 115 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 SHISA9B4DS77 424 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 HLA-DMBP28068 263 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 LINC00322Q6ZN03 302 aaPredicted RBP6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 LINC00477Q96M19 166 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 MOB4Q9Y3A3 225 aa6.64□□□□□ -1.35
LIMCH1-216ENST00000512820 ATG2AQ2TAZ0 1938 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 C19orf71A6NCJ1 209 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 ATP6V0E1O15342 81 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 CDKN1BP46527 198 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 ADAMTSL5Q6ZMM2 481 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 FAM110DQ8TAY7 271 aaPredicted RBP6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 IGFBPL1Q8WX77 278 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 C7orf69Q9H7B7 122 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 LINC00574Q9H8X3 128 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 ANKRD39Q53RE8 183 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 DTX2Q86UW9 622 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 MBD6Q96DN6 1003 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 CRYGCP07315 174 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 SAA4P35542 130 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 GTSF1LQ9H1H1 148 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 RNF114Q9Y508 228 aa6.63□□□□□ -1.35
LIMCH1-216ENST00000512820 TRAV26-2A0A0B4J265 109 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 CTRLP40313 264 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 PCP2Q8IVA1 136 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 TECTAO75443 2155 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 TAX1BP3O14907 124 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 CSTL1Q9H114 145 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 GEMIN7Q9H840 131 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 A0A1W2PPM0 123 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 TEX22C9J3V5 150 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 G3V318 75 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 SIVA1O15304 175 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 EFNA4P52798 201 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 C1orf159Q96HA4 380 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 CCL19Q99731 98 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 PRSS22Q9GZN4 317 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 MRPL35Q9NZE8 188 aaKnown RBP6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 NPFFO15130 113 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 ZGRF1Q86YA3 2104 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 DUX5Q96PT3 197 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 TNFRSF18Q9Y5U5 241 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 CACNA1BQ00975 2339 aa6.62□□□□□ -1.35
LIMCH1-216ENST00000512820 VCX2Q9H322 139 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 CREBBPQ92793 2442 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 LINC00310P59036 64 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 MTURNQ8N3F0 131 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 DYNAPQ8N1N2 210 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 PGPEP1Q9NXJ5 209 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 IGHV3OR16-12A0A075B7B8 117 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 BRD3OSQ6XYD6 125 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 LCNL1Q6ZST4 164 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 C8orf86Q6ZUL3 223 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 MRAP2Q96G30 205 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 MLST8Q9BVC4 326 aa6.61□□□□□ -1.35
LIMCH1-216ENST00000512820 TRAV2A0A0B4J234 112 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 LINC01549A6NIU2 74 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 K7ERJ3 54 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 IGLV1-47P01700 117 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 GATA1P15976 413 aaPredicted RBP6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 EMP1P54849 157 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 CIRBPQ14011 172 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 MSRB1Q9NZV6 116 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 UBE2E1P51965 193 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 SUMO2P61956 95 aaKnown RBP6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 RAX2Q96IS3 184 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 IGHV3-64A0A075B6Q5 118 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 A8MWV9 139 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 TTC32Q5I0X7 151 aa6.6□□□□□ -1.35
LIMCH1-216ENST00000512820 C2orf66Q6UXQ4 117 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms