RNA–Protein interactions for RNA: ENST00000509454.5

LIMCH1-210, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,506 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-210ENST00000509454 SFT2D1Q8WV19 159 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 LINC00477Q96M19 166 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 VGLL1Q99990 258 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 AGPAT4-IT1Q9H0P7 198 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 EDA2RQ9HAV5 297 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 STAB2Q8WWQ8 2551 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 IGHV4-28A0A0C4DH34 117 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 DIRC3C9JPN6 131 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 HBE1P02100 147 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 MIFP14174 115 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 HTN1P15515 57 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 EMP1P54849 157 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 GNG5P63218 68 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 ZFAND6Q6FIF0 208 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 DPPA3Q6W0C5 159 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 GOLT1AQ6ZVE7 132 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 MUC7Q8TAX7 377 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 LINC01587Q99440 93 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 X6R8D5 127 aa8.29□□□□□ -1.08
LIMCH1-210ENST00000509454 ZNF705EA8MWA4 302 aaPredicted RBP8.28□□□□□ -1.08
LIMCH1-210ENST00000509454 IFNA7P01567 189 aa8.28□□□□□ -1.08
LIMCH1-210ENST00000509454 H2AFB1P0C5Y9 115 aa8.28□□□□□ -1.08
LIMCH1-210ENST00000509454 SUMO1P63165 101 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-210ENST00000509454 C9orf47Q6ZRZ4 202 aa8.28□□□□□ -1.08
LIMCH1-210ENST00000509454 Q8TAT8 98 aa8.28□□□□□ -1.08
LIMCH1-210ENST00000509454 HUWE1Q7Z6Z7 4374 aaKnown RBP8.28□□□□□ -1.08
LIMCH1-210ENST00000509454 ZNF705GA8MUZ8 300 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 K7EQM0 130 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 CRXO43186 299 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 GPX1P07203 203 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 RNASE4P34096 147 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 ZNF138P52744 262 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 PMS2P11Q13670 270 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 KIR3DS1Q14943 382 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 RRN3P1Q2M238 152 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 CST9LP1Q5W188 147 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 ZNF705AQ6ZN79 300 aaPredicted RBP8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 C1orf158Q8N1D5 194 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 Q8NAQ8 132 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 C5orf17Q8NAS9 161 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 IL17DQ8TAD2 202 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 ODF3Q96PU9 254 aa8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 C11orf68Q9H3H3 251 aaKnown RBP8.27□□□□□ -1.09
LIMCH1-210ENST00000509454 TRAV12-3A0A0B4J271 114 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 A0A1W2PRE2 83 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 RBAKDNA6NC62 111 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 CXorf65A6NEN9 183 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 SMIM9A6NGZ8 99 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 RBMY1A1P0DJD3 496 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 RBMY1CP0DJD4 496 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 RAB5CP51148 216 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 RBMY1FQ15415 496 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 GFI1BQ5VTD9 330 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 TMEM256Q8N2U0 113 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 SUN5Q8TC36 379 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 NIPSNAP3BQ9BS92 247 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 ZNF492Q9P255 531 aa8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 YTHDF2Q9Y5A9 579 aaKnown RBP8.26□□□□□ -1.09
LIMCH1-210ENST00000509454 LOC102723971A0A1B0GUV8 181 aa8.25□□□□□ -1.09
LIMCH1-210ENST00000509454 C7orf71A4D174 169 aa8.25□□□□□ -1.09
LIMCH1-210ENST00000509454 GGTLC3B5MD39 225 aa8.25□□□□□ -1.09
LIMCH1-210ENST00000509454 C11orf45Q8TAV5 145 aa8.25□□□□□ -1.09
LIMCH1-210ENST00000509454 MBD3L1Q8WWY6 194 aa8.25□□□□□ -1.09
LIMCH1-210ENST00000509454 SGK494Q96LW2 274 aa8.25□□□□□ -1.09
LIMCH1-210ENST00000509454 NEU1Q99519 415 aa8.25□□□□□ -1.09
LIMCH1-210ENST00000509454 TRAV8-1A0A0A6YYK1 113 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 FAM74A7A6NL05 159 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 C3orf84H3BNL1 204 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 TEX46H3BTG2 121 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 TCRAP04437 139 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 PRM2P04554 102 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 SULT1A2P50226 295 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 NANOS2P60321 138 aaKnown RBP8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 BTN1A1Q13410 526 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 EPDR1Q9UM22 224 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 SERTM2A0A1B0GWG4 89 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 TMEM189A5PLL7 270 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 H7BYZ3 331 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 PAGE4O60829 102 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 TAS2R60P59551 318 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 ALKAL2Q6UX46 152 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 CCDC28AQ8IWP9 274 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 CYB561D1Q8N8Q1 229 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 C20orf144Q9BQM9 153 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 ATG101Q9BSB4 218 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 NDFIP1Q9BT67 221 aa8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 NKX6-2Q9C056 277 aaPredicted RBP8.24□□□□□ -1.09
LIMCH1-210ENST00000509454 RGS13O14921 159 aa8.23□□□□□ -1.09
LIMCH1-210ENST00000509454 CRISP2P16562 243 aa8.23□□□□□ -1.09
LIMCH1-210ENST00000509454 PPT1P50897 306 aa8.23□□□□□ -1.09
LIMCH1-210ENST00000509454 ZNF767PQ75MW2 155 aa8.23□□□□□ -1.09
LIMCH1-210ENST00000509454 PRNTQ86SH4 94 aa8.23□□□□□ -1.09
LIMCH1-210ENST00000509454 ARL6IP6Q8N6S5 226 aa8.23□□□□□ -1.09
LIMCH1-210ENST00000509454 TREM1Q9NP99 234 aa8.23□□□□□ -1.09
LIMCH1-210ENST00000509454 GNG13Q9P2W3 67 aa8.23□□□□□ -1.09
LIMCH1-210ENST00000509454 TRAV34A0A0B4J273 112 aa8.22□□□□□ -1.09
LIMCH1-210ENST00000509454 CBY3A6NI87 242 aa8.22□□□□□ -1.09
LIMCH1-210ENST00000509454 KLLNB2CW77 178 aa8.22□□□□□ -1.09
LIMCH1-210ENST00000509454 F6UZH7 168 aa8.22□□□□□ -1.09
LIMCH1-210ENST00000509454 PEX7O00628 323 aa8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms