RNA–Protein interactions for RNA: ENST00000508583.5

NUP54-207, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 521 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-207ENST00000508583 SUN5Q8TC36 379 aa6.66□□□□□ -1.34
NUP54-207ENST00000508583 MAP1LC3BQ9GZQ8 125 aa6.66□□□□□ -1.34
NUP54-207ENST00000508583 SLC35B3Q9H1N7 401 aa6.66□□□□□ -1.34
NUP54-207ENST00000508583 ARL2-SNX15V9GYD0 113 aa6.66□□□□□ -1.34
NUP54-207ENST00000508583 STAB2Q8WWQ8 2551 aa6.66□□□□□ -1.34
NUP54-207ENST00000508583 PGPA6NDG6 321 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 C3orf84H3BNL1 204 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 M0R2Z0 102 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 HBE1P02100 147 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 ZNF705DP0CH99 300 aaPredicted RBP6.65□□□□□ -1.34
NUP54-207ENST00000508583 ZNF705BP0CI00 300 aaPredicted RBP6.65□□□□□ -1.34
NUP54-207ENST00000508583 FXYD7P58549 80 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 ZNF705AQ6ZN79 300 aaPredicted RBP6.65□□□□□ -1.34
NUP54-207ENST00000508583 C5orf17Q8NAS9 161 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 MUC7Q8TAX7 377 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 FAM213BQ8TBF2 198 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 TMED6Q8WW62 240 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 TCEAL7Q9BRU2 100 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 EDA2RQ9HAV5 297 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 LENEPQ9Y5L5 61 aa6.65□□□□□ -1.34
NUP54-207ENST00000508583 NBEAL2Q6ZNJ1 2754 aa6.65□□□□□ -1.35
NUP54-207ENST00000508583 HUWE1Q7Z6Z7 4374 aaKnown RBP6.64□□□□□ -1.35
NUP54-207ENST00000508583 IGHV3OR16-12A0A075B7B8 117 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 IGKV2-40A0A087WW87 121 aaPredicted RBP6.64□□□□□ -1.35
NUP54-207ENST00000508583 A0A0J9YWU9 116 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 KRTAP9-6A0A140TA67 174 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 A0A1B0GVG6 124 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 DIRC3C9JPN6 131 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 PRAC2D3DTV9 90 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 H7BYZ3 331 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 IGKV2D-40P01614 121 aaPredicted RBP6.64□□□□□ -1.35
NUP54-207ENST00000508583 H2AFB1P0C5Y9 115 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 ZNF138P52744 262 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 RRN3P1Q2M238 152 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 C9orf62Q8N4C0 152 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 SFT2D1Q8WV19 159 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 NIPSNAP3BQ9BS92 247 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 NDFIP1Q9BT67 221 aa6.64□□□□□ -1.35
NUP54-207ENST00000508583 F6UZH7 168 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 CT45A10P0DMU9 189 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 TAS2R60P59551 318 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 ZNF726P1Q15940 193 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 Q8NAQ8 132 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 MBD3L1Q8WWY6 194 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 HIST1H2BAQ96A08 127 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 AGPAT4-IT1Q9H0P7 198 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 ZNF492Q9P255 531 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 RPH3ALQ9UNE2 315 aa6.63□□□□□ -1.35
NUP54-207ENST00000508583 TRAV12-2A0A075B6T6 113 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 IGHV4-28A0A0C4DH34 117 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 LOC102723971A0A1B0GUV8 181 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 C7orf71A4D174 169 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 CRXO43186 299 aaPredicted RBP6.62□□□□□ -1.35
NUP54-207ENST00000508583 EIF3GO75821 320 aaKnown RBP eCLIP6.62□□□□□ -1.35
NUP54-207ENST00000508583 IFNA7P01567 189 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 GPX1P07203 203 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 CRISP2P16562 243 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 FHITP49789 147 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 SULT1A2P50226 295 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 SUMO1P63165 101 aaKnown RBP6.62□□□□□ -1.35
NUP54-207ENST00000508583 ZNF493Q6ZR52 646 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 GOLT1AQ6ZVE7 132 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 SSX7Q7RTT5 188 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 CCDC28AQ8IWP9 274 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 CYB561D1Q8N8Q1 229 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 C11orf45Q8TAV5 145 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 LINC01587Q99440 93 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 VGLL1Q99990 258 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 PYGO2Q9BRQ0 406 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 ATG101Q9BSB4 218 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 X6R8D5 127 aa6.62□□□□□ -1.35
NUP54-207ENST00000508583 TRAV1-1A0A0B4J248 108 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 NUPR2A6NF83 97 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 FAM74A7A6NL05 159 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 KLLNB2CW77 178 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 IFNA1P01562 189 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 TCRAP04437 139 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 SPART-AS1P0CW21 52 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 TAGLN2P37802 199 aaKnown RBP6.61□□□□□ -1.35
NUP54-207ENST00000508583 FGF8P55075 233 aaPredicted RBP6.61□□□□□ -1.35
NUP54-207ENST00000508583 CD300CQ08708 224 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 ERCC8Q13216 396 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 GFI1BQ5VTD9 330 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 CST9LP1Q5W188 147 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 C1orf158Q8N1D5 194 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 ZNF680Q8NEM1 530 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 C16orf74Q96GX8 76 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 FAM19A4Q96LR4 140 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 MANBALQ9NQG1 85 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 EPDR1Q9UM22 224 aa6.61□□□□□ -1.35
NUP54-207ENST00000508583 CXorf65A6NEN9 183 aa6.6□□□□□ -1.35
NUP54-207ENST00000508583 GGTLC3B5MD39 225 aa6.6□□□□□ -1.35
NUP54-207ENST00000508583 C11orf94C9JXX5 98 aa6.6□□□□□ -1.35
NUP54-207ENST00000508583 UBE2G2P60604 165 aa6.6□□□□□ -1.35
NUP54-207ENST00000508583 SAPCD1Q5SSQ6 148 aa6.6□□□□□ -1.35
NUP54-207ENST00000508583 TMEM75Q8N9X5 138 aa6.6□□□□□ -1.35
NUP54-207ENST00000508583 TMEM263Q8WUH6 116 aaKnown RBP6.6□□□□□ -1.35
NUP54-207ENST00000508583 TXNDC17Q9BRA2 123 aa6.6□□□□□ -1.35
NUP54-207ENST00000508583 TRAV12-3A0A0B4J271 114 aa6.59□□□□□ -1.35
NUP54-207ENST00000508583 LYRM9A8MSI8 78 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms