RNA–Protein interactions for RNA: ENST00000506941.1

NPHP4-210, Transcript of nephrocystin 4, humanhuman

TSL 4

Gene NPHP4, Length 570 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-210ENST00000506941 CSN1S1P47710 185 aa13.08□□□□□ -0.32
NPHP4-210ENST00000506941 FGF8P55075 233 aaPredicted RBP13.08□□□□□ -0.32
NPHP4-210ENST00000506941 GFI1BQ5VTD9 330 aa13.08□□□□□ -0.32
NPHP4-210ENST00000506941 C9orf62Q8N4C0 152 aa13.08□□□□□ -0.32
NPHP4-210ENST00000506941 TMED6Q8WW62 240 aa13.08□□□□□ -0.32
NPHP4-210ENST00000506941 LINC00477Q96M19 166 aa13.08□□□□□ -0.32
NPHP4-210ENST00000506941 PLECQ15149 4684 aaKnown RBP13.08□□□□□ -0.32
NPHP4-210ENST00000506941 KMT2CQ8NEZ4 4911 aaKnown RBP13.07□□□□□ -0.32
NPHP4-210ENST00000506941 MAP1LC3B2A6NCE7 125 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 SMIM9A6NGZ8 99 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 J3KRW8 73 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 TSPOP30536 169 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 LEPP41159 167 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 EIF5AP63241 154 aaKnown RBP13.07□□□□□ -0.32
NPHP4-210ENST00000506941 IQCF2Q8IXL9 164 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 Q8TAT8 98 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 LYSTQ99698 3801 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 TMEM208Q9BTX3 173 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 MAP1LC3BQ9GZQ8 125 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 TMEM167BQ9NRX6 74 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 CELA1Q9UNI1 258 aa13.07□□□□□ -0.32
NPHP4-210ENST00000506941 RBAKDNA6NC62 111 aa13.06□□□□□ -0.32
NPHP4-210ENST00000506941 GGTLC3B5MD39 225 aa13.06□□□□□ -0.32
NPHP4-210ENST00000506941 NANOS2P60321 138 aaKnown RBP13.06□□□□□ -0.32
NPHP4-210ENST00000506941 GNG5P63218 68 aa13.06□□□□□ -0.32
NPHP4-210ENST00000506941 ZFP69Q49AA0 526 aa13.06□□□□□ -0.32
NPHP4-210ENST00000506941 TMEM78Q5T7P6 136 aa13.06□□□□□ -0.32
NPHP4-210ENST00000506941 RXFP4Q8TDU9 374 aa13.06□□□□□ -0.32
NPHP4-210ENST00000506941 ZNF492Q9P255 531 aa13.06□□□□□ -0.32
NPHP4-210ENST00000506941 RPH3ALQ9UNE2 315 aa13.06□□□□□ -0.32
NPHP4-210ENST00000506941 ZNF705GA8MUZ8 300 aaPredicted RBP13.05□□□□□ -0.32
NPHP4-210ENST00000506941 KLLNB2CW77 178 aa13.05□□□□□ -0.32
NPHP4-210ENST00000506941 UMAD1C9J7I0 102 aa13.05□□□□□ -0.32
NPHP4-210ENST00000506941 HBE1P02100 147 aa13.05□□□□□ -0.32
NPHP4-210ENST00000506941 SLC25A5P05141 298 aaKnown RBP13.05□□□□□ -0.32
NPHP4-210ENST00000506941 PMS2P11Q13670 270 aa13.05□□□□□ -0.32
NPHP4-210ENST00000506941 FAM74A1Q5RGS3 127 aa13.05□□□□□ -0.32
NPHP4-210ENST00000506941 PRR9Q5T870 116 aa13.05□□□□□ -0.32
NPHP4-210ENST00000506941 C11orf45Q8TAV5 145 aa13.05□□□□□ -0.32
NPHP4-210ENST00000506941 FAM213BQ8TBF2 198 aa13.05□□□□□ -0.32
NPHP4-210ENST00000506941 YTHDF2Q9Y5A9 579 aaKnown RBP13.05□□□□□ -0.32
NPHP4-210ENST00000506941 LOC102723971A0A1B0GUV8 181 aa13.04□□□□□ -0.32
NPHP4-210ENST00000506941 CRISP2P16562 243 aa13.04□□□□□ -0.32
NPHP4-210ENST00000506941 ZNF138P52744 262 aa13.04□□□□□ -0.32
NPHP4-210ENST00000506941 RRN3P1Q2M238 152 aa13.04□□□□□ -0.32
NPHP4-210ENST00000506941 GOLT1AQ6ZVE7 132 aa13.04□□□□□ -0.32
NPHP4-210ENST00000506941 TMEM256Q8N2U0 113 aa13.04□□□□□ -0.32
NPHP4-210ENST00000506941 ZFAND2AQ8N6M9 145 aa13.04□□□□□ -0.32
NPHP4-210ENST00000506941 ARL6IP6Q8N6S5 226 aa13.04□□□□□ -0.32
NPHP4-210ENST00000506941 CMTM2Q8TAZ6 248 aa13.04□□□□□ -0.32
NPHP4-210ENST00000506941 TRAV12-3A0A0B4J271 114 aa13.03□□□□□ -0.32
NPHP4-210ENST00000506941 AZU1P20160 251 aa13.03□□□□□ -0.32
NPHP4-210ENST00000506941 EMP1P54849 157 aa13.03□□□□□ -0.32
NPHP4-210ENST00000506941 UBE2G2P60604 165 aa13.03□□□□□ -0.32
NPHP4-210ENST00000506941 BTN1A1Q13410 526 aa13.03□□□□□ -0.32
NPHP4-210ENST00000506941 C5orf17Q8NAS9 161 aa13.03□□□□□ -0.32
NPHP4-210ENST00000506941 LINC01587Q99440 93 aa13.03□□□□□ -0.32
NPHP4-210ENST00000506941 C20orf144Q9BQM9 153 aa13.03□□□□□ -0.32
NPHP4-210ENST00000506941 TRAV8-1A0A0A6YYK1 113 aa13.02□□□□□ -0.33
NPHP4-210ENST00000506941 A0A1W2PRE2 83 aa13.02□□□□□ -0.33
NPHP4-210ENST00000506941 C7orf71A4D174 169 aa13.02□□□□□ -0.33
NPHP4-210ENST00000506941 CXorf65A6NEN9 183 aa13.02□□□□□ -0.33
NPHP4-210ENST00000506941 NKX2-5P52952 324 aaPredicted RBP13.02□□□□□ -0.33
NPHP4-210ENST00000506941 SUMO1P63165 101 aaKnown RBP13.02□□□□□ -0.33
NPHP4-210ENST00000506941 DPPA3Q6W0C5 159 aa13.02□□□□□ -0.33
NPHP4-210ENST00000506941 SLC51BQ86UW2 128 aa13.02□□□□□ -0.33
NPHP4-210ENST00000506941 MBD3L1Q8WWY6 194 aa13.02□□□□□ -0.33
NPHP4-210ENST00000506941 TMEM189A5PLL7 270 aa13.01□□□□□ -0.33
NPHP4-210ENST00000506941 FAM74A7A6NL05 159 aa13.01□□□□□ -0.33
NPHP4-210ENST00000506941 H7BYZ3 331 aa13.01□□□□□ -0.33
NPHP4-210ENST00000506941 TCRAP04437 139 aa13.01□□□□□ -0.33
NPHP4-210ENST00000506941 NMBP08949 121 aa13.01□□□□□ -0.33
NPHP4-210ENST00000506941 RNASE4P34096 147 aaKnown RBP13.01□□□□□ -0.33
NPHP4-210ENST00000506941 TAS2R60P59551 318 aa13.01□□□□□ -0.33
NPHP4-210ENST00000506941 Q6ZQT7 251 aa13.01□□□□□ -0.33
NPHP4-210ENST00000506941 SFT2D1Q8WV19 159 aa13.01□□□□□ -0.33
NPHP4-210ENST00000506941 TRBV7-9A0A0J9YWB2 115 aa13□□□□□ -0.33
NPHP4-210ENST00000506941 A0A1B0GV50 99 aa13□□□□□ -0.33
NPHP4-210ENST00000506941 PLAC8L1A1L4L8 177 aa13□□□□□ -0.33
NPHP4-210ENST00000506941 ZNF324O75467 553 aaPredicted RBP13□□□□□ -0.33
NPHP4-210ENST00000506941 GPX1P07203 203 aa13□□□□□ -0.33
NPHP4-210ENST00000506941 HTN1P15515 57 aa13□□□□□ -0.33
NPHP4-210ENST00000506941 ZNF767PQ75MW2 155 aa13□□□□□ -0.33
NPHP4-210ENST00000506941 EPDR1Q9UM22 224 aa13□□□□□ -0.33
NPHP4-210ENST00000506941 SACSQ9NZJ4 4579 aa13□□□□□ -0.33
NPHP4-210ENST00000506941 DNAH1Q9P2D7 4330 aa12.99□□□□□ -0.33
NPHP4-210ENST00000506941 C12orf74Q32Q52 190 aa12.99□□□□□ -0.33
NPHP4-210ENST00000506941 PHLDA1Q8WV24 401 aaPredicted RBP12.99□□□□□ -0.33
NPHP4-210ENST00000506941 TVP23CQ96ET8 276 aa12.99□□□□□ -0.33
NPHP4-210ENST00000506941 SGK494Q96LW2 274 aa12.99□□□□□ -0.33
NPHP4-210ENST00000506941 NIPSNAP3BQ9BS92 247 aa12.99□□□□□ -0.33
NPHP4-210ENST00000506941 DKK2Q9UBU2 259 aa12.99□□□□□ -0.33
NPHP4-210ENST00000506941 LENEPQ9Y5L5 61 aa12.99□□□□□ -0.33
NPHP4-210ENST00000506941 ALMS1Q8TCU4 4167 aa12.99□□□□□ -0.33
NPHP4-210ENST00000506941 IGLV2-11P01706 119 aa12.98□□□□□ -0.33
NPHP4-210ENST00000506941 H2AFB1P0C5Y9 115 aa12.98□□□□□ -0.33
NPHP4-210ENST00000506941 SULT1A2P50226 295 aa12.98□□□□□ -0.33
NPHP4-210ENST00000506941 FAM222AQ5U5X8 452 aa12.98□□□□□ -0.33
NPHP4-210ENST00000506941 EIF5AL1Q6IS14 154 aaKnown RBP12.98□□□□□ -0.33
NPHP4-210ENST00000506941 Q6ZTC4 211 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms