RNA–Protein interactions for RNA: ENST00000506690.1

SQSTM1-211, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 2,405 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-211ENST00000506690 ZNF80P51504 273 aaPredicted RBP13.35□□□□□ -0.27
SQSTM1-211ENST00000506690 IGKV2-40A0A087WW87 121 aaPredicted RBP13.35□□□□□ -0.27
SQSTM1-211ENST00000506690 C17orf100A8MU93 164 aa13.35□□□□□ -0.27
SQSTM1-211ENST00000506690 IGKV2D-40P01614 121 aaPredicted RBP13.35□□□□□ -0.27
SQSTM1-211ENST00000506690 AMTNQ6UX39 209 aa13.35□□□□□ -0.27
SQSTM1-211ENST00000506690 NUP37Q8NFH4 326 aa13.35□□□□□ -0.27
SQSTM1-211ENST00000506690 FBXL15Q9H469 300 aa13.35□□□□□ -0.27
SQSTM1-211ENST00000506690 AGRNO00468 2067 aa13.35□□□□□ -0.27
SQSTM1-211ENST00000506690 TMEM158Q8WZ71 300 aa13.34□□□□□ -0.27
SQSTM1-211ENST00000506690 TRAV40A0A0B4J280 105 aa13.34□□□□□ -0.27
SQSTM1-211ENST00000506690 INSL3P51460 131 aa13.34□□□□□ -0.27
SQSTM1-211ENST00000506690 SRSF2Q01130 221 aaKnown RBP13.34□□□□□ -0.27
SQSTM1-211ENST00000506690 RRN3P1Q2M238 152 aa13.34□□□□□ -0.27
SQSTM1-211ENST00000506690 TMEM108Q6UXF1 575 aa13.34□□□□□ -0.27
SQSTM1-211ENST00000506690 ASPMQ8IZT6 3477 aa13.34□□□□□ -0.27
SQSTM1-211ENST00000506690 IGHV1-3A0A0C4DH29 117 aa13.33□□□□□ -0.27
SQSTM1-211ENST00000506690 SRSF8Q9BRL6 282 aaKnown RBP13.33□□□□□ -0.27
SQSTM1-211ENST00000506690 TMEM160Q9NX00 188 aa13.33□□□□□ -0.27
SQSTM1-211ENST00000506690 IGLV2-18A0A075B6J9 118 aa13.33□□□□□ -0.28
SQSTM1-211ENST00000506690 A0A1B0GWB2 263 aa13.33□□□□□ -0.28
SQSTM1-211ENST00000506690 PRRG2O14669 202 aa13.33□□□□□ -0.28
SQSTM1-211ENST00000506690 TTC9CQ8N5M4 171 aa13.33□□□□□ -0.28
SQSTM1-211ENST00000506690 IGLV1-47P01700 117 aa13.32□□□□□ -0.28
SQSTM1-211ENST00000506690 ATP5G2Q06055 141 aa13.32□□□□□ -0.28
SQSTM1-211ENST00000506690 SCGB2A2Q13296 93 aa13.32□□□□□ -0.28
SQSTM1-211ENST00000506690 Q5PR19 223 aa13.32□□□□□ -0.28
SQSTM1-211ENST00000506690 ASCL5Q7RTU5 278 aa13.32□□□□□ -0.28
SQSTM1-211ENST00000506690 Q8N8P6 123 aa13.32□□□□□ -0.28
SQSTM1-211ENST00000506690 WFDC12Q8WWY7 111 aa13.32□□□□□ -0.28
SQSTM1-211ENST00000506690 MRAP2Q96G30 205 aa13.32□□□□□ -0.28
SQSTM1-211ENST00000506690 MRPL35Q9NZE8 188 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-211ENST00000506690 TRBV7-3A0A075B6L6 115 aa13.31□□□□□ -0.28
SQSTM1-211ENST00000506690 NBL1P41271 181 aa13.31□□□□□ -0.28
SQSTM1-211ENST00000506690 Q8TAT8 98 aa13.31□□□□□ -0.28
SQSTM1-211ENST00000506690 FAM215AQ9Y5M1 114 aa13.31□□□□□ -0.28
SQSTM1-211ENST00000506690 GATA1P15976 413 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-211ENST00000506690 MTURNQ8N3F0 131 aa13.31□□□□□ -0.28
SQSTM1-211ENST00000506690 CCL17Q92583 94 aa13.31□□□□□ -0.28
SQSTM1-211ENST00000506690 ZZEF1O43149 2961 aa13.3□□□□□ -0.28
SQSTM1-211ENST00000506690 FAM27E3Q08E93 113 aa13.3□□□□□ -0.28
SQSTM1-211ENST00000506690 ADIPOQQ15848 244 aa13.3□□□□□ -0.28
SQSTM1-211ENST00000506690 HIST1H4GQ99525 98 aa13.3□□□□□ -0.28
SQSTM1-211ENST00000506690 KAAG1Q9UBP8 84 aa13.3□□□□□ -0.28
SQSTM1-211ENST00000506690 TRAV26-1A0A087WT03 109 aa13.3□□□□□ -0.28
SQSTM1-211ENST00000506690 LINC01619G3V211 115 aa13.3□□□□□ -0.28
SQSTM1-211ENST00000506690 DLX1P56177 255 aa13.3□□□□□ -0.28
SQSTM1-211ENST00000506690 BUB1B-PAK6H3BSN5 160 aa13.29□□□□□ -0.28
SQSTM1-211ENST00000506690 RAB1BQ9H0U4 201 aa13.29□□□□□ -0.28
SQSTM1-211ENST00000506690 CNOT1A5YKK6 2376 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-211ENST00000506690 KALRNO60229 2985 aa13.29□□□□□ -0.28
SQSTM1-211ENST00000506690 A0A087WX48 190 aa13.29□□□□□ -0.28
SQSTM1-211ENST00000506690 ORM1P02763 201 aa13.29□□□□□ -0.28
SQSTM1-211ENST00000506690 C20orf78Q9BR46 151 aa13.29□□□□□ -0.28
SQSTM1-211ENST00000506690 Q6ZS92 163 aa13.28□□□□□ -0.28
SQSTM1-211ENST00000506690 DTX2Q86UW9 622 aa13.28□□□□□ -0.28
SQSTM1-211ENST00000506690 MRPL16Q9NX20 251 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-211ENST00000506690 APOMO95445 188 aa13.28□□□□□ -0.28
SQSTM1-211ENST00000506690 IGHG4P01861 327 aa13.28□□□□□ -0.28
SQSTM1-211ENST00000506690 FOXI1Q12951 378 aa13.28□□□□□ -0.28
SQSTM1-211ENST00000506690 GFRALQ6UXV0 394 aa13.28□□□□□ -0.28
SQSTM1-211ENST00000506690 MYOZ3Q8TDC0 251 aa13.28□□□□□ -0.28
SQSTM1-211ENST00000506690 RNF5Q99942 180 aa13.28□□□□□ -0.28
SQSTM1-211ENST00000506690 DCHS1Q96JQ0 3298 aa13.27□□□□□ -0.28
SQSTM1-211ENST00000506690 PRSS47A8MTI9 375 aa13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 CNIH1O95406 144 aa13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 CRYBA4P53673 196 aa13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 DEFB109BQ30KR1 87 aa13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 MORN3Q6PF18 240 aaPredicted RBP13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 ATP6V0E2Q8NHE4 81 aa13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 DMXL1Q9Y485 3027 aa13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 NCBP2LA6PVI3 153 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 FABP5P3A8MUU1 101 aa13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 PLNP26678 52 aa13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 PRB3Q04118 309 aaPredicted RBP13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 CDIP1Q9H305 208 aa13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 GEMIN7Q9H840 131 aaKnown RBP13.27□□□□□ -0.29
SQSTM1-211ENST00000506690 RPL7P18124 248 aaKnown RBP13.26□□□□□ -0.29
SQSTM1-211ENST00000506690 IGF2-ASQ6U949 168 aa13.26□□□□□ -0.29
SQSTM1-211ENST00000506690 C1QTNF4Q9BXJ3 329 aa13.26□□□□□ -0.29
SQSTM1-211ENST00000506690 S4R3C0 116 aa13.26□□□□□ -0.29
SQSTM1-211ENST00000506690 LAGE3Q14657 143 aa13.25□□□□□ -0.29
SQSTM1-211ENST00000506690 ZNF672Q499Z4 452 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-211ENST00000506690 C8orf86Q6ZUL3 223 aa13.25□□□□□ -0.29
SQSTM1-211ENST00000506690 ZFHX2Q9C0A1 2572 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-211ENST00000506690 CFAP126Q5VTH2 177 aa13.25□□□□□ -0.29
SQSTM1-211ENST00000506690 RPEQ96AT9 228 aa13.25□□□□□ -0.29
SQSTM1-211ENST00000506690 ZNF48Q96MX3 618 aaPredicted RBP13.25□□□□□ -0.29
SQSTM1-211ENST00000506690 F8W735 103 aaPredicted RBP13.24□□□□□ -0.29
SQSTM1-211ENST00000506690 SMCPP49901 116 aaPredicted RBP13.24□□□□□ -0.29
SQSTM1-211ENST00000506690 KLRD1Q13241 179 aa13.24□□□□□ -0.29
SQSTM1-211ENST00000506690 NRACQ8N912 160 aa13.24□□□□□ -0.29
SQSTM1-211ENST00000506690 ZNF418Q8TF45 676 aaPredicted RBP13.24□□□□□ -0.29
SQSTM1-211ENST00000506690 SH3BGRL2Q9UJC5 107 aa13.24□□□□□ -0.29
SQSTM1-211ENST00000506690 SYT8Q8NBV8 401 aa13.24□□□□□ -0.29
SQSTM1-211ENST00000506690 SMAD5-AS1Q9Y6J3 95 aa13.24□□□□□ -0.29
SQSTM1-211ENST00000506690 MYMXA0A1B0GTQ4 84 aa13.23□□□□□ -0.29
SQSTM1-211ENST00000506690 NDUFA3O95167 84 aa13.23□□□□□ -0.29
SQSTM1-211ENST00000506690 PPIFP30405 207 aaKnown RBP13.23□□□□□ -0.29
SQSTM1-211ENST00000506690 IGFL4Q6B9Z1 124 aa13.23□□□□□ -0.29
SQSTM1-211ENST00000506690 MUC6Q6W4X9 2439 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms