RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 ELOBQ15370 118 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 DEFB136Q30KP8 78 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 DLX4Q92988 240 aaPredicted RBP6.4□□□□□ -1.38
SF3A1-210ENST00000498259 RAX2Q96IS3 184 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 FAM210BQ96KR6 192 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 PRR25Q96S07 402 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 RPP21Q9H633 154 aaKnown RBP6.4□□□□□ -1.38
SF3A1-210ENST00000498259 AURKAIP1Q9NWT8 199 aaPredicted RBP6.4□□□□□ -1.38
SF3A1-210ENST00000498259 NAT8BQ9UHF3 227 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 URGCP-MRPS24S4R325 110 aa6.4□□□□□ -1.38
SF3A1-210ENST00000498259 ACANP16112 2415 aa6.4□□□□□ -1.39
SF3A1-210ENST00000498259 SONP18583 2426 aaKnown RBP6.39□□□□□ -1.39
SF3A1-210ENST00000498259 IGKV3-7A0A075B6H7 116 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 IGKV2-40A0A087WW87 121 aaPredicted RBP6.39□□□□□ -1.39
SF3A1-210ENST00000498259 TRAV8-1A0A0A6YYK1 113 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 TRAV8-2A0A0B4J237 113 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 COLCA2A8K830 154 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 C1orf196B1AJZ1 125 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 K7EQG2 157 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 SOCS3O14543 225 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 IGKV2D-40P01614 121 aaPredicted RBP6.39□□□□□ -1.39
SF3A1-210ENST00000498259 S100A8P05109 93 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 CSN3P07498 182 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 PFN1P07737 140 aaKnown RBP6.39□□□□□ -1.39
SF3A1-210ENST00000498259 INSL3P51460 131 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 RAB5BP61020 215 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 SRSF2Q01130 221 aaKnown RBP6.39□□□□□ -1.39
SF3A1-210ENST00000498259 HIST1H1AQ02539 215 aaPredicted RBP6.39□□□□□ -1.39
SF3A1-210ENST00000498259 OR5I1Q13606 314 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 WDR73Q6P4I2 378 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 RASL11AQ6T310 242 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 RNF182Q8N6D2 247 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 C11orf44Q8N8P7 122 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 NUDT10Q8NFP7 164 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 DCANP1Q8TF63 244 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 TSKUQ8WUA8 353 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 NUDT11Q96G61 164 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 SGK494Q96LW2 274 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 ODF3Q96PU9 254 aa6.39□□□□□ -1.39
SF3A1-210ENST00000498259 RNASE7Q9H1E1 156 aaKnown RBP6.39□□□□□ -1.39
SF3A1-210ENST00000498259 A0A1B0GW15 77 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 A0A1W2PPQ1 181 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 ZNF705FA8MVS1 300 aaPredicted RBP6.38□□□□□ -1.39
SF3A1-210ENST00000498259 NPIPB6E9PJ23 425 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 LEPP41159 167 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 RPS10P46783 165 aaKnown RBP6.38□□□□□ -1.39
SF3A1-210ENST00000498259 DEFB114Q30KQ6 69 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 NSUN5P1Q3KNT7 163 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 WFDC3Q8IUB2 231 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 NHLRC2Q8NBF2 726 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 OR8A1Q8NGG7 326 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 PYGO2Q9BRQ0 406 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 MCRIP2Q9BUT9 160 aaKnown RBP6.38□□□□□ -1.39
SF3A1-210ENST00000498259 V9GYV3 84 aa6.38□□□□□ -1.39
SF3A1-210ENST00000498259 ZNF469Q96JG9 3925 aaPredicted RBP6.37□□□□□ -1.39
SF3A1-210ENST00000498259 SMIM27A0A1W2PRY6 76 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 TMEM189A5PLL7 270 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 C19orf71A6NCJ1 209 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 IZUMO1RA6ND01 250 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 MT-ND6P03923 174 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 TYMSP04818 313 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 GPX1P07203 203 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 TFPI2P48307 235 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 PSMG4Q5JS54 123 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 IGFL4Q6B9Z1 124 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 FOXI2Q6ZQN5 318 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 C18orf65Q6ZTR6 163 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 ATP5L2Q7Z4Y8 100 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 OR2D3Q8NGH3 330 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 VGLL1Q99990 258 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 AGPAT4-IT1Q9H0P7 198 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 SRD5A3Q9H8P0 318 aa6.37□□□□□ -1.39
SF3A1-210ENST00000498259 TRAV21A0A0B4J279 112 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 F2Z2F3 143 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 SAP30O75446 220 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 S100A6P06703 90 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 ZNF688P0C7X2 276 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 HLA-DMBP28068 263 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 ZC2HC1AQ96GY0 325 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 DUX3Q96PT4 197 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 FAM110AQ9BQ89 295 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 GPR61Q9BZJ8 451 aa6.36□□□□□ -1.39
SF3A1-210ENST00000498259 FLNBO75369 2602 aaKnown RBP6.36□□□□□ -1.39
SF3A1-210ENST00000498259 TGIF2-C20orf24A0A0A6YYL0 155 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 HIGD1CA8MV81 97 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 PRAC2D3DTV9 90 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 AMBPP02760 352 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 ORM1P02763 201 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 CRISP2P16562 243 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 FOXA3P55318 350 aaPredicted RBP6.35□□□□□ -1.39
SF3A1-210ENST00000498259 NUTF2P61970 127 aaKnown RBP6.35□□□□□ -1.39
SF3A1-210ENST00000498259 ERCC8Q13216 396 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 RIGQ13278 110 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 CD300EQ496F6 205 aaPredicted RBP6.35□□□□□ -1.39
SF3A1-210ENST00000498259 TMEM61Q8N0U2 210 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.35□□□□□ -1.39
SF3A1-210ENST00000498259 Q8TAT8 98 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 TMEM158Q8WZ71 300 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 KCNS1Q96KK3 526 aa6.35□□□□□ -1.39
SF3A1-210ENST00000498259 C20orf173Q96LM9 149 aa6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms