RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 RNF152Q8N8N0 203 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 FER1L6-AS1Q8NA97 138 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 TMEM18Q96B42 140 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 RNASE7Q9H1E1 156 aaKnown RBP6.43□□□□□ -1.38
USP54-215ENST00000497106 TRGV11A0A075B6L2 103 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 M0R3E3 92 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 CAMPP49913 170 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 IGF2BP2-AS1Q96M15 143 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 GNB1LQ9BYB4 327 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 C2orf70A6NJV1 201 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 FOXI2Q6ZQN5 318 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 CLUHP3Q96NS8 147 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 PRR25Q96S07 402 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 U3KQE9 123 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 USP24Q9UPU5 2620 aa6.43□□□□□ -1.38
USP54-215ENST00000497106 SLC17A3O00476 420 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 CBLN1P23435 193 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 STHQ8IWL8 128 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 OR8A1Q8NGG7 326 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 PGLYRP4Q96LB8 373 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 CSTL1Q9H114 145 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 MYO18BQ8IUG5 2567 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 OR11H12B2RN74 326 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 PACRGQ96M98 296 aaPredicted RBP6.42□□□□□ -1.38
USP54-215ENST00000497106 CREBBPQ92793 2442 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 PGPEP1LA6NFU8 196 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 SH2D1AO60880 128 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 C11orf44Q8N8P7 122 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 MRPL18Q9H0U6 180 aaKnown RBP6.42□□□□□ -1.38
USP54-215ENST00000497106 EPG5Q9HCE0 2579 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 MED13LQ71F56 2210 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 DOPEY2Q9Y3R5 2298 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 TMSB15BA0A087X1C1 80 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 HIGD1CA8MV81 97 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 PTTG1IPP53801 180 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 TWIST1Q15672 202 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 GTSCR1Q86UQ5 136 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 PHLDA3Q9Y5J5 127 aa6.42□□□□□ -1.38
USP54-215ENST00000497106 F8W735 103 aaPredicted RBP6.41□□□□□ -1.38
USP54-215ENST00000497106 SPINK4O60575 86 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 PPP1R17O96001 155 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 FABP4P15090 132 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 TIMM8BQ9Y5J9 83 aaPredicted RBP6.41□□□□□ -1.38
USP54-215ENST00000497106 TNCP24821 2201 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 INAFM1C9JVW0 142 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 CRLF1O75462 422 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 TYMSP04818 313 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 PFN1P07737 140 aaKnown RBP6.41□□□□□ -1.38
USP54-215ENST00000497106 ZNF688P0C7X2 276 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 SRSF2Q01130 221 aaKnown RBP6.41□□□□□ -1.38
USP54-215ENST00000497106 C9orf47Q6ZRZ4 202 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 C1QTNF4Q9BXJ3 329 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 ARHGAP32A7KAX9 2087 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 TRBV12-3P01733 135 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 RNASE4P34096 147 aaKnown RBP6.41□□□□□ -1.38
USP54-215ENST00000497106 INSL3P51460 131 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 FA2HQ7L5A8 372 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 MS4A6AQ9H2W1 248 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 JOSD1Q15040 202 aaPredicted RBP6.41□□□□□ -1.38
USP54-215ENST00000497106 FBLN7Q53RD9 439 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 ODF3Q96PU9 254 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 V9GYV3 84 aa6.41□□□□□ -1.38
USP54-215ENST00000497106 TRGC2P03986 189 aa6.4□□□□□ -1.38
USP54-215ENST00000497106 SLURP1P55000 103 aa6.4□□□□□ -1.38
USP54-215ENST00000497106 KLF5Q13887 457 aaPredicted RBP6.4□□□□□ -1.38
USP54-215ENST00000497106 UNQ9165/PRO28630Q6UXU0 137 aa6.4□□□□□ -1.38
USP54-215ENST00000497106 C12orf54Q6X4T0 127 aa6.4□□□□□ -1.38
USP54-215ENST00000497106 Q71RC1 249 aaPredicted RBP6.4□□□□□ -1.38
USP54-215ENST00000497106 HIST3H2BBQ8N257 126 aa6.4□□□□□ -1.38
USP54-215ENST00000497106 LINC01006Q8NI28 216 aa6.4□□□□□ -1.38
USP54-215ENST00000497106 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.4□□□□□ -1.382e-6■■■■□ 24.7
USP54-215ENST00000497106 DNAH14Q0VDD8 3507 aa6.4□□□□□ -1.38
USP54-215ENST00000497106 TRAV8-1A0A0A6YYK1 113 aa6.4□□□□□ -1.38
USP54-215ENST00000497106 C17orf77Q96MU5 243 aa6.4□□□□□ -1.38
USP54-215ENST00000497106 ALKBH7Q9BT30 221 aaPredicted RBP6.4□□□□□ -1.38
USP54-215ENST00000497106 SMIM27A0A1W2PRY6 76 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 IFITM10A6NMD0 228 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 CD33P20138 364 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 C9orf66Q5T8R8 295 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 ZNF664Q8N3J9 261 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 LINC00479Q96M42 142 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 HSBP1O75506 76 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 COL5A1-AS1Q5SY13 56 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 Q6ZS46 218 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 RNF182Q8N6D2 247 aa6.4□□□□□ -1.39
USP54-215ENST00000497106 CXCL1P09341 107 aa6.39□□□□□ -1.39
USP54-215ENST00000497106 CITED2Q99967 270 aaPredicted RBP6.39□□□□□ -1.39
USP54-215ENST00000497106 INSP01308 110 aa6.39□□□□□ -1.39
USP54-215ENST00000497106 PMCHP20382 165 aa6.39□□□□□ -1.39
USP54-215ENST00000497106 DEFB131AP59861 70 aa6.39□□□□□ -1.39
USP54-215ENST00000497106 ZNF705AQ6ZN79 300 aaPredicted RBP6.39□□□□□ -1.39
USP54-215ENST00000497106 C3orf56Q8N813 242 aa6.39□□□□□ -1.39
USP54-215ENST00000497106 TMEM213A2RRL7 107 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 ZNF705FA8MVS1 300 aaPredicted RBP6.38□□□□□ -1.39
USP54-215ENST00000497106 NPIPB6E9PJ23 425 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 MRPS12O15235 138 aaKnown RBP6.38□□□□□ -1.39
USP54-215ENST00000497106 CD28P10747 220 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 Q8TAT8 98 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 ZFYVE26Q68DK2 2539 aa6.38□□□□□ -1.39
USP54-215ENST00000497106 C7orf71A4D174 169 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms