RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 CAMK2N1Q7Z7J9 78 aa4.71□□□□□ -1.66
USF3-204ENST00000496826 POLR3KQ9Y2Y1 108 aaPredicted RBP4.71□□□□□ -1.66
USF3-204ENST00000496826 E9PCH4 1651 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 IGLV3-27P01718 113 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 CFC1BP0CG36 223 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 CFC1P0CG37 223 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 CSNK1G2-AS1Q8NCQ2 148 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 LINC01554Q52M75 96 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 TMEM240Q5SV17 173 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 DMKNQ6E0U4 476 aaPredicted RBP4.7□□□□□ -1.66
USF3-204ENST00000496826 DCANP1Q8TF63 244 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 SND1-IT1Q9HBX3 110 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 A0A1W2PR77 199 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 PLAC8L1A1L4L8 177 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 CLLU1OSQ5K130 101 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 CNOT1A5YKK6 2376 aaKnown RBP4.7□□□□□ -1.66
USF3-204ENST00000496826 TSC2P49815 1807 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 PMS2P5A8MQ11 134 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 HGFACQ04756 655 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 A0A1B0GXF2 115 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 IGHV3-11P01762 117 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 ZNF474Q6S9Z5 364 aaPredicted RBP4.7□□□□□ -1.66
USF3-204ENST00000496826 C2orf66Q6UXQ4 117 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 FOXI2Q6ZQN5 318 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 C20orf144Q9BQM9 153 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 COL22A1Q8NFW1 1626 aaPredicted RBP4.7□□□□□ -1.66
USF3-204ENST00000496826 IGKV1D-12P01611 117 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 ZNF883P0CG24 379 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 ALKAL1Q6UXT8 129 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 PRSS41Q7RTY9 318 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 LINC00337Q8N6G1 96 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 C5orf56Q8N8D9 126 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 H7C423 109 aa4.7□□□□□ -1.66
USF3-204ENST00000496826 TIAF1O95411 115 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 HIST1H2BOP23527 126 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 HIST1H2BBP33778 126 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 HIST2H2BEQ16778 126 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 TMEM219Q86XT9 240 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 GVINP1Q7Z2Y8 2422 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 IGHV3-66A0A0C4DH42 116 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 LINC00271P0C7V0 271 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 GLIS1Q8NBF1 620 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 IGLV3-22A0A075B6J6 115 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 A0A1W2PPM0 123 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 CCL2P13500 99 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 SCO2A0A1W2PP80 73 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 SPAG11AQ6PDA7 123 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 C5orf38Q86SI9 138 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 COL16A1Q07092 1604 aaPredicted RBP4.69□□□□□ -1.66
USF3-204ENST00000496826 IGHV4OR15-8A0A075B7B6 117 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 A0A087WW49 117 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 K7EP13 123 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 TIMM17BO60830 172 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 IGHV3-53P01767 116 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 C16orf47Q6ZP98 133 aaPredicted RBP4.69□□□□□ -1.66
USF3-204ENST00000496826 MPLKIPQ8TAP9 179 aa4.69□□□□□ -1.66
USF3-204ENST00000496826 MROH1Q8NDA8 1641 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 IGHV3-49A0A0A0MS15 119 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 SMIM9A6NGZ8 99 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 IGHV4-59P01825 116 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 CCL14Q16627 93 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 SPINT4Q6UDR6 99 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 FAM30AQ9NZY2 134 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 WDR83OSQ9Y284 106 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 A0A1B0GW64 132 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 K7EN84 100 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 BLCAPP62952 87 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 Q5BKY6 102 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 PCNX1Q96RV3 2341 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 TRBV7-3A0A075B6L6 115 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 IGKV1-5P01602 117 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 GGNQ86UU5 652 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 SBSPONQ8IVN8 264 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 C14orf178Q8N769 122 aaPredicted RBP4.68□□□□□ -1.66
USF3-204ENST00000496826 BRD3OSQ6XYD6 125 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 GVQW1Q8N7I0 195 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 SORL1Q92673 2214 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 RBX1P62877 108 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 TRAV40A0A0B4J280 105 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 SDHAF1A6NFY7 115 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 MSRB2Q9Y3D2 182 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 C4AP0C0L4 1744 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 C4BP0C0L5 1744 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 GLI2P10070 1586 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 NBASA2RRP1 2371 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 IGLV3-10A0A075B6K4 115 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 IGHV2OR16-5A0A0B4J2B6 119 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 HIST1H2BDP58876 126 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 HIST1H2BCP62807 126 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.68□□□□□ -1.66
USF3-204ENST00000496826 VN1R4Q7Z5H5 301 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 HIST1H2BHQ93079 126 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 HIST1H2BNQ99877 126 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 HIST1H2BMQ99879 126 aa4.68□□□□□ -1.66
USF3-204ENST00000496826 SH2D1AO60880 128 aa4.67□□□□□ -1.66
USF3-204ENST00000496826 IGHV3-30P01768 117 aa4.67□□□□□ -1.66
USF3-204ENST00000496826 IGHV3-30-5P0DP03 117 aa4.67□□□□□ -1.66
USF3-204ENST00000496826 FAM120AOSQ5T036 256 aa4.67□□□□□ -1.66
USF3-204ENST00000496826 Q8N976 141 aa4.67□□□□□ -1.66
USF3-204ENST00000496826 IFT172Q9UG01 1749 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms