RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ZNF80P51504 273 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-230ENST00000495090 ZNF672Q499Z4 452 aaPredicted RBP7.54□□□□□ -1.2
SYNE1-230ENST00000495090 IL17RELQ6ZVW7 336 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 SH2D6Q7Z4S9 175 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 MYOZ3Q8TDC0 251 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 IGFBPL1Q8WX77 278 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 MRPL16Q9NX20 251 aaKnown RBP7.54□□□□□ -1.2
SYNE1-230ENST00000495090 VPS13AQ96RL7 3174 aa7.54□□□□□ -1.2
SYNE1-230ENST00000495090 PLXNB1O43157 2135 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 COL6A3P12111 3177 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 ARFGEF3Q5TH69 2177 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 MFAP4P55083 255 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 LAGE3Q14657 143 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 MAPKAPK5-AS1Q8N8E1 139 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 CCL17Q92583 94 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 CLUHP3Q96NS8 147 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 HIST1H4GQ99525 98 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 C1QTNF4Q9BXJ3 329 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 TMEM160Q9NX00 188 aa7.53□□□□□ -1.2
SYNE1-230ENST00000495090 MRPL35Q9NZE8 188 aaKnown RBP7.53□□□□□ -1.2
SYNE1-230ENST00000495090 RBAKDNA6NC62 111 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 CDX4O14627 284 aaPredicted RBP7.52□□□□□ -1.2
SYNE1-230ENST00000495090 CNIH1O95406 144 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 PF4V1P10720 104 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 FAM27E3Q08E93 113 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 KLRD1Q13241 179 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 GFRALQ6UXV0 394 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 C22orf34Q6ZV56 151 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 DTX2Q86UW9 622 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 RPEQ96AT9 228 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 MSRB1Q9NZV6 116 aa7.52□□□□□ -1.2
SYNE1-230ENST00000495090 LY6LH3BQJ8 138 aa7.52□□□□□ -1.21
SYNE1-230ENST00000495090 GAS8-AS1O95177 125 aa7.52□□□□□ -1.21
SYNE1-230ENST00000495090 APOMO95445 188 aa7.52□□□□□ -1.21
SYNE1-230ENST00000495090 ORM1P02763 201 aa7.52□□□□□ -1.21
SYNE1-230ENST00000495090 FOXI1Q12951 378 aa7.52□□□□□ -1.21
SYNE1-230ENST00000495090 PLA2G2CQ5R387 149 aa7.52□□□□□ -1.21
SYNE1-230ENST00000495090 VCX2Q9H322 139 aa7.52□□□□□ -1.21
SYNE1-230ENST00000495090 IGLV11-55A0A075B6I3 123 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 MYMXA0A1B0GTQ4 84 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 F8VRH5 84 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 H7C1H1 209 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 PRRG2O14669 202 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 SCGB2A1O75556 95 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 NDUFA3O95167 84 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 IGHG4P01861 327 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 CFAP126Q5VTH2 177 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 NRACQ8N912 160 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 Q8TAT8 98 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 ZNF418Q8TF45 676 aaPredicted RBP7.51□□□□□ -1.21
SYNE1-230ENST00000495090 RALYQ9UKM9 306 aaKnown RBP7.51□□□□□ -1.21
SYNE1-230ENST00000495090 CYSLTR1Q9Y271 337 aa7.51□□□□□ -1.21
SYNE1-230ENST00000495090 IGHV4-4A0A075B6R2 117 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 F8W735 103 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-230ENST00000495090 SLC25A16P16260 332 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 MORN3Q6PF18 240 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-230ENST00000495090 AMTNQ6UX39 209 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 C8orf86Q6ZUL3 223 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 NPBQ8NG41 125 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 DLX4Q92988 240 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-230ENST00000495090 TECTAO75443 2155 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 OR11H12B2RN74 326 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 K7EMI3 77 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 NBR2O15453 112 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 HOXA3O43365 443 aaPredicted RBP7.5□□□□□ -1.21
SYNE1-230ENST00000495090 LYRM7Q5U5X0 104 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 OR11H1Q8NG94 326 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 OR11H2Q8NH07 326 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 RNASE6Q93091 150 aaKnown RBP7.5□□□□□ -1.21
SYNE1-230ENST00000495090 FANCD2OSQ96PS1 177 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 PLCE1Q9P212 2302 aa7.5□□□□□ -1.21
SYNE1-230ENST00000495090 SPAARA0A1B0GVQ0 90 aa7.49□□□□□ -1.21
SYNE1-230ENST00000495090 INSL3P51460 131 aa7.49□□□□□ -1.21
SYNE1-230ENST00000495090 CRYBA4P53673 196 aa7.49□□□□□ -1.21
SYNE1-230ENST00000495090 OR11H6Q8NGC7 330 aa7.49□□□□□ -1.21
SYNE1-230ENST00000495090 CDIP1Q9H305 208 aa7.49□□□□□ -1.21
SYNE1-230ENST00000495090 GEMIN7Q9H840 131 aaKnown RBP7.49□□□□□ -1.21
SYNE1-230ENST00000495090 C21orf62Q9NYP8 219 aa7.49□□□□□ -1.21
SYNE1-230ENST00000495090 SMAD5-AS1Q9Y6J3 95 aa7.49□□□□□ -1.21
SYNE1-230ENST00000495090 MALRD1Q5VYJ5 2156 aa7.49□□□□□ -1.21
SYNE1-230ENST00000495090 URB1O60287 2271 aaKnown RBP7.49□□□□□ -1.21
SYNE1-230ENST00000495090 TRAV26-1A0A087WT03 109 aa7.48□□□□□ -1.21
SYNE1-230ENST00000495090 PRB4P10163 310 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-230ENST00000495090 GATA1P15976 413 aaPredicted RBP7.48□□□□□ -1.21
SYNE1-230ENST00000495090 ATP5G2Q06055 141 aa7.48□□□□□ -1.21
SYNE1-230ENST00000495090 IGFL3Q6UXB1 125 aa7.48□□□□□ -1.21
SYNE1-230ENST00000495090 TIMM23O14925 209 aa7.48□□□□□ -1.21
SYNE1-230ENST00000495090 UBE2D1P51668 147 aa7.48□□□□□ -1.21
SYNE1-230ENST00000495090 BSPH1Q075Z2 132 aa7.48□□□□□ -1.21
SYNE1-230ENST00000495090 SYT8Q8NBV8 401 aa7.48□□□□□ -1.21
SYNE1-230ENST00000495090 C20orf78Q9BR46 151 aa7.48□□□□□ -1.21
SYNE1-230ENST00000495090 PRO3102Q9H379 93 aa7.48□□□□□ -1.21
SYNE1-230ENST00000495090 IGKV3D-20A0A0C4DH25 116 aa7.47□□□□□ -1.21
SYNE1-230ENST00000495090 IGHV7-4-1A0A0J9YVY3 117 aa7.47□□□□□ -1.21
SYNE1-230ENST00000495090 LGALS1P09382 135 aaKnown RBP7.47□□□□□ -1.21
SYNE1-230ENST00000495090 SMCPP49901 116 aaPredicted RBP7.47□□□□□ -1.21
SYNE1-230ENST00000495090 ORMDL2Q53FV1 153 aa7.47□□□□□ -1.21
SYNE1-230ENST00000495090 DYNAPQ8N1N2 210 aa7.47□□□□□ -1.21
SYNE1-230ENST00000495090 CFHR4Q92496 578 aa7.47□□□□□ -1.21
SYNE1-230ENST00000495090 TOMM6Q96B49 74 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms