RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 MINOS1-NBL1R4GNA1 71 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 CHD8Q9HCK8 2581 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 NDUFS7O75251 213 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 SRD5A1P18405 259 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 IGFL4Q6B9Z1 124 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 ZNF833PQ6ZTB9 187 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 NDUFB8O95169 186 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 KLF5Q13887 457 aaPredicted RBP13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 CTSZQ9UBR2 303 aa13.03□□□□□ -0.32
CCDC88B-209ENST00000494080 MSMPQ1L6U9 139 aa13.02□□□□□ -0.32
CCDC88B-209ENST00000494080 CD300EQ496F6 205 aaPredicted RBP13.02□□□□□ -0.32
CCDC88B-209ENST00000494080 PGPEP1Q9NXJ5 209 aa13.02□□□□□ -0.32
CCDC88B-209ENST00000494080 TRAV41A0A0B4J266 112 aa13.02□□□□□ -0.33
CCDC88B-209ENST00000494080 CHTOPQ9Y3Y2 248 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-209ENST00000494080 WIPF2Q8TF74 440 aaPredicted RBP13.02□□□□□ -0.33
CCDC88B-209ENST00000494080 DUX5Q96PT3 197 aa13.02□□□□□ -0.33
CCDC88B-209ENST00000494080 TMEM262E9PQX1 116 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 K7ERJ3 54 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 NPFFO15130 113 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 SH2D1AO60880 128 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 BRCA2P51587 3418 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 GAGE2BQ13066 116 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 GAGE2EQ4V326 116 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 ZFAND6Q6FIF0 208 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 GAGE2DQ9UEU5 116 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 SORL1Q92673 2214 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 DLX4Q92988 240 aaPredicted RBP13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 PAX8Q06710 450 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 ZNF747Q9BV97 191 aa13.01□□□□□ -0.33
CCDC88B-209ENST00000494080 IGKV3OR2-268A0A0C4DH90 116 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 OOSP1A8MZH6 123 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 AMTNQ6UX39 209 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 NAV2Q8IVL1 2488 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 TEX48A0A1B0GUV7 120 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 SHISA9B4DS77 424 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 H3BMG7 143 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 NDPQ00604 133 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 C11orf44Q8N8P7 122 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 MOB4Q9Y3A3 225 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 TP53TG3Q9ULZ0 132 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 IGLV2-14P01704 120 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 IGF2-ASQ6U949 168 aa13□□□□□ -0.33
CCDC88B-209ENST00000494080 PLXNB1O43157 2135 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 LAGE3Q14657 143 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 LGALS9BQ3B8N2 356 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 LGALS9CQ6DKI2 356 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 IGFBPL1Q8WX77 278 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 TSPAN13O95857 204 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 SIGLEC8Q9NYZ4 499 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 PSMB11A5LHX3 300 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 FAM104BQ5XKR9 115 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 ZNF48Q96MX3 618 aaPredicted RBP12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 TP73-AS1Q9UF72 201 aa12.99□□□□□ -0.33
CCDC88B-209ENST00000494080 RNASE4P34096 147 aaKnown RBP12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 ZNF56Q15929 161 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 PCP2Q8IVA1 136 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 FXYD5Q96DB9 178 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 SLC50A1Q9BRV3 221 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 IGLC1P0CG04 106 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 RUSC1-AS1Q66K80 236 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 SYT8Q8NBV8 401 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 A0A1W2PRX2 142 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 LHBP01229 141 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 IGHV4-39P01824 125 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 MAPK1IP1LQ8NDC0 245 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 VGLL1Q99990 258 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 TMEM8BA6NDV4 472 aa12.98□□□□□ -0.33
CCDC88B-209ENST00000494080 LAMA3Q16787 3333 aa12.97□□□□□ -0.33
CCDC88B-209ENST00000494080 C22orf46C9J442 243 aa12.97□□□□□ -0.33
CCDC88B-209ENST00000494080 ZNF562Q6V9R5 426 aa12.97□□□□□ -0.33
CCDC88B-209ENST00000494080 ASIPP42127 132 aa12.97□□□□□ -0.33
CCDC88B-209ENST00000494080 NPFFR1Q9GZQ6 430 aa12.97□□□□□ -0.33
CCDC88B-209ENST00000494080 LINC01559Q495D7 138 aa12.97□□□□□ -0.33
CCDC88B-209ENST00000494080 C10orf126Q8N4M7 172 aa12.97□□□□□ -0.33
CCDC88B-209ENST00000494080 ORMDL2Q53FV1 153 aa12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 DEFB104AQ8WTQ1 72 aa12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 B4DSR2 109 aa12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 F8W1H4 67 aa12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 MORN5Q5VZ52 161 aa12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 MRAP2Q96G30 205 aa12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 LINC00311Q8N616 119 aa12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 SCRT2Q9NQ03 307 aa12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 DKK2Q9UBU2 259 aa12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 SETD2Q9BYW2 2564 aaPredicted RBP12.96□□□□□ -0.33
CCDC88B-209ENST00000494080 SSBP2P81877 361 aaPredicted RBP12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 RAX2Q96IS3 184 aa12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 KAAG1Q9UBP8 84 aa12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 G3V318 75 aa12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 TNFRSF6BO95407 300 aa12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 MRPL51Q4U2R6 128 aaKnown RBP12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 HIVEP3Q5T1R4 2406 aa12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 TRAV2A0A0B4J234 112 aa12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 PLNP26678 52 aa12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 RRN3P1Q2M238 152 aa12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 PRSS22Q9GZN4 317 aa12.95□□□□□ -0.34
CCDC88B-209ENST00000494080 C2orf70A6NJV1 201 aa12.94□□□□□ -0.34
CCDC88B-209ENST00000494080 CTRLP40313 264 aa12.94□□□□□ -0.34
CCDC88B-209ENST00000494080 PPP1R17O96001 155 aa12.94□□□□□ -0.34
CCDC88B-209ENST00000494080 ITLN2Q8WWU7 325 aaPredicted RBP12.94□□□□□ -0.34
CCDC88B-209ENST00000494080 C8orf49Q96NF6 230 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 228.8 ms