RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 CSTL1Q9H114 145 aa11.57□□□□□ -0.56
HPS4-216ENST00000493455 TRAV12-2A0A075B6T6 113 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 RBFOX3A6NFN3 312 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 F6UZH7 168 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 CT45A10P0DMU9 189 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 MEF2BQ02080 365 aaPredicted RBP11.56□□□□□ -0.56
HPS4-216ENST00000493455 DEFB135Q30KP9 77 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 MORN3Q6PF18 240 aaPredicted RBP11.56□□□□□ -0.56
HPS4-216ENST00000493455 PRNTQ86SH4 94 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 SBSPONQ8IVN8 264 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 LYPD6BQ8NI32 183 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 LINC00479Q96M42 142 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 VAX2Q9UIW0 290 aa11.56□□□□□ -0.56
HPS4-216ENST00000493455 RBAKDNA6NC62 111 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 ZNF138P52744 262 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 CEBPGP53567 150 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 UBE2G1P62253 170 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 AMTNQ6UX39 209 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 LINC00322Q6ZN03 302 aaPredicted RBP11.55□□□□□ -0.56
HPS4-216ENST00000493455 C9orf47Q6ZRZ4 202 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 CCDC28AQ8IWP9 274 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 HIST1H2BAQ96A08 127 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 LINC00477Q96M19 166 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 RETNQ9HD89 108 aa11.55□□□□□ -0.56
HPS4-216ENST00000493455 IGHV3OR16-12A0A075B7B8 117 aa11.54□□□□□ -0.56
HPS4-216ENST00000493455 LEPP41159 167 aa11.54□□□□□ -0.56
HPS4-216ENST00000493455 ZNF492Q9P255 531 aa11.54□□□□□ -0.56
HPS4-216ENST00000493455 PSG8Q9UQ74 426 aa11.54□□□□□ -0.56
HPS4-216ENST00000493455 KIR2DL5BA0A0G2JN68 375 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 KIR2DL5BA0A0G2JPC4 375 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 SERTM2A0A1B0GWG4 89 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 TSPOP30536 169 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 CDKN1BP46527 198 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 FLI1Q01543 452 aaPredicted RBP11.53□□□□□ -0.56
HPS4-216ENST00000493455 KIR3DS1Q14943 382 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 ZNF506Q5JVG8 444 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 KIR2DL5AQ8N109 375 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 TMEM75Q8N9X5 138 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 KIR2DL5BQ8NHK3 375 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 FAM210AQ96ND0 272 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 MED9Q9NWA0 146 aa11.53□□□□□ -0.56
HPS4-216ENST00000493455 A8MTW9 85 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 GPX1P07203 203 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 RNASE4P34096 147 aaKnown RBP11.52□□□□□ -0.57
HPS4-216ENST00000493455 TAGLN2P37802 199 aaKnown RBP11.52□□□□□ -0.57
HPS4-216ENST00000493455 CLLU1Q5K131 121 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 ARL6IP6Q8N6S5 226 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 CLUHP3Q96NS8 147 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 B9D2Q9BPU9 175 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 TXNDC17Q9BRA2 123 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 TCEAL7Q9BRU2 100 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 NDFIP1Q9BT67 221 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 C1QTNF4Q9BXJ3 329 aa11.52□□□□□ -0.57
HPS4-216ENST00000493455 MEGF8Q7Z7M0 2845 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 PDE6DO43924 150 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 INSP01308 110 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 GIG44P09565 113 aaPredicted RBP11.51□□□□□ -0.57
HPS4-216ENST00000493455 BTN1A1Q13410 526 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 PMS2P11Q13670 270 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 ZNF674Q2M3X9 581 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 Q86TA4 180 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 FMC1Q96HJ9 113 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 C8orf49Q96NF6 230 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 RCHY1Q96PM5 261 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 TMEM208Q9BTX3 173 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 DERL1Q9BUN8 251 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 TREM1Q9NP99 234 aa11.51□□□□□ -0.57
HPS4-216ENST00000493455 TRAV12-3A0A0B4J271 114 aa11.5□□□□□ -0.57
HPS4-216ENST00000493455 UBE2CO00762 179 aa11.5□□□□□ -0.57
HPS4-216ENST00000493455 IGLV2-11P01706 119 aa11.5□□□□□ -0.57
HPS4-216ENST00000493455 AMBPP02760 352 aa11.5□□□□□ -0.57
HPS4-216ENST00000493455 PRR9Q5T870 116 aa11.5□□□□□ -0.57
HPS4-216ENST00000493455 GFI1BQ5VTD9 330 aa11.5□□□□□ -0.57
HPS4-216ENST00000493455 NHLRC2Q8NBF2 726 aa11.5□□□□□ -0.57
HPS4-216ENST00000493455 C2CD4CQ8TF44 421 aa11.5□□□□□ -0.57
HPS4-216ENST00000493455 ODF3Q96PU9 254 aa11.5□□□□□ -0.57
HPS4-216ENST00000493455 CRXO43186 299 aaPredicted RBP11.49□□□□□ -0.57
HPS4-216ENST00000493455 RPL35P42766 123 aaKnown RBP11.49□□□□□ -0.57
HPS4-216ENST00000493455 SRSF3P84103 164 aaKnown RBP11.49□□□□□ -0.57
HPS4-216ENST00000493455 TVP23CQ96ET8 276 aa11.49□□□□□ -0.57
HPS4-216ENST00000493455 IGF2BP2-AS1Q96M15 143 aa11.49□□□□□ -0.57
HPS4-216ENST00000493455 SPATA25Q9BR10 227 aa11.49□□□□□ -0.57
HPS4-216ENST00000493455 C7orf71A4D174 169 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 RAB19A4D1S5 217 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 RGS13O14921 159 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 SPRY2O43597 315 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 HTN1P15515 57 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 PEA15Q15121 130 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 TMEM183BQ1AE95 376 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 ZFAND2AQ8N6M9 145 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 C11orf52Q96A22 123 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 FAM19A4Q96LR4 140 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 ZMAT4Q9H898 229 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 GOLT1BQ9Y3E0 138 aa11.48□□□□□ -0.57
HPS4-216ENST00000493455 FBLL1A6NHQ2 334 aaKnown RBP11.47□□□□□ -0.57
HPS4-216ENST00000493455 RBMY1A1P0DJD3 496 aaKnown RBP11.47□□□□□ -0.57
HPS4-216ENST00000493455 RBMY1CP0DJD4 496 aa11.47□□□□□ -0.57
HPS4-216ENST00000493455 CRISP2P16562 243 aa11.47□□□□□ -0.57
HPS4-216ENST00000493455 RBMY1FQ15415 496 aaKnown RBP11.47□□□□□ -0.57
HPS4-216ENST00000493455 Q6ZQT7 251 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms