RNA–Protein interactions for RNA: ENST00000493265.2

LIME1-208, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 2

Gene LIME1, Length 661 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-208ENST00000493265 LINC00479Q96M42 142 aa12.64□□□□□ -0.39
LIME1-208ENST00000493265 ATG101Q9BSB4 218 aa12.64□□□□□ -0.39
LIME1-208ENST00000493265 SLC35B3Q9H1N7 401 aa12.64□□□□□ -0.39
LIME1-208ENST00000493265 AGRNO00468 2067 aa12.64□□□□□ -0.39
LIME1-208ENST00000493265 TRAV34A0A0B4J273 112 aa12.63□□□□□ -0.39
LIME1-208ENST00000493265 F6UZH7 168 aa12.63□□□□□ -0.39
LIME1-208ENST00000493265 J3KRW8 73 aa12.63□□□□□ -0.39
LIME1-208ENST00000493265 K7EQM0 130 aa12.63□□□□□ -0.39
LIME1-208ENST00000493265 CT45A10P0DMU9 189 aa12.63□□□□□ -0.39
LIME1-208ENST00000493265 PMS2P11Q13670 270 aa12.63□□□□□ -0.39
LIME1-208ENST00000493265 CLLU1Q5K131 121 aa12.63□□□□□ -0.39
LIME1-208ENST00000493265 CYB561D1Q8N8Q1 229 aa12.63□□□□□ -0.39
LIME1-208ENST00000493265 M0R2Z0 102 aa12.62□□□□□ -0.39
LIME1-208ENST00000493265 CA1P00915 261 aaPredicted RBP12.62□□□□□ -0.39
LIME1-208ENST00000493265 AKR1C3P42330 323 aa12.62□□□□□ -0.39
LIME1-208ENST00000493265 SPINK13Q1W4C9 94 aa12.62□□□□□ -0.39
LIME1-208ENST00000493265 HIST1H2BAQ96A08 127 aa12.62□□□□□ -0.39
LIME1-208ENST00000493265 FAM210AQ96ND0 272 aa12.62□□□□□ -0.39
LIME1-208ENST00000493265 RBAKDNA6NC62 111 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 A8MZ25 164 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 TAGLN2P37802 199 aaKnown RBP12.61□□□□□ -0.39
LIME1-208ENST00000493265 ZNF138P52744 262 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 CEBPGP53567 150 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 APOC4P55056 127 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 NUTF2P61970 127 aaKnown RBP12.61□□□□□ -0.39
LIME1-208ENST00000493265 ZNF506Q5JVG8 444 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 AMTNQ6UX39 209 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 C9orf47Q6ZRZ4 202 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 PRNTQ86SH4 94 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 ARL6IP6Q8N6S5 226 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 LINC00477Q96M19 166 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 WWC2-AS2Q96NR7 200 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 CSTL1Q9H114 145 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 XCL2Q9UBD3 114 aa12.61□□□□□ -0.39
LIME1-208ENST00000493265 SERTM2A0A1B0GWG4 89 aa12.6□□□□□ -0.39
LIME1-208ENST00000493265 RGS13O14921 159 aa12.6□□□□□ -0.39
LIME1-208ENST00000493265 UBE2G1P62253 170 aa12.6□□□□□ -0.39
LIME1-208ENST00000493265 MORN3Q6PF18 240 aaPredicted RBP12.6□□□□□ -0.39
LIME1-208ENST00000493265 LINC00322Q6ZN03 302 aaPredicted RBP12.6□□□□□ -0.39
LIME1-208ENST00000493265 B9D2Q9BPU9 175 aa12.6□□□□□ -0.39
LIME1-208ENST00000493265 TXNDC17Q9BRA2 123 aa12.6□□□□□ -0.39
LIME1-208ENST00000493265 TCEAL7Q9BRU2 100 aa12.6□□□□□ -0.39
LIME1-208ENST00000493265 PSG8Q9UQ74 426 aa12.6□□□□□ -0.39
LIME1-208ENST00000493265 TRAV12-2A0A075B6T6 113 aa12.59□□□□□ -0.39
LIME1-208ENST00000493265 A8MTW9 85 aa12.59□□□□□ -0.39
LIME1-208ENST00000493265 PDE6DO43924 150 aa12.59□□□□□ -0.39
LIME1-208ENST00000493265 LEPP41159 167 aa12.59□□□□□ -0.39
LIME1-208ENST00000493265 FLI1Q01543 452 aaPredicted RBP12.59□□□□□ -0.39
LIME1-208ENST00000493265 MED9Q9NWA0 146 aa12.59□□□□□ -0.39
LIME1-208ENST00000493265 ZNF492Q9P255 531 aa12.59□□□□□ -0.39
LIME1-208ENST00000493265 IGLV2-11P01706 119 aa12.58□□□□□ -0.4
LIME1-208ENST00000493265 SRSF3P84103 164 aaKnown RBP12.58□□□□□ -0.4
LIME1-208ENST00000493265 KIR3DS1Q14943 382 aa12.58□□□□□ -0.4
LIME1-208ENST00000493265 TMEM75Q8N9X5 138 aa12.58□□□□□ -0.4
LIME1-208ENST00000493265 CLUHP3Q96NS8 147 aa12.58□□□□□ -0.4
LIME1-208ENST00000493265 DERL1Q9BUN8 251 aa12.58□□□□□ -0.4
LIME1-208ENST00000493265 KIR2DL5BA0A0G2JN68 375 aa12.57□□□□□ -0.4
LIME1-208ENST00000493265 KIR2DL5BA0A0G2JPC4 375 aa12.57□□□□□ -0.4
LIME1-208ENST00000493265 GIG44P09565 113 aaPredicted RBP12.57□□□□□ -0.4
LIME1-208ENST00000493265 TSPOP30536 169 aa12.57□□□□□ -0.4
LIME1-208ENST00000493265 DEFB135Q30KP9 77 aa12.57□□□□□ -0.4
LIME1-208ENST00000493265 SBSPONQ8IVN8 264 aa12.57□□□□□ -0.4
LIME1-208ENST00000493265 KIR2DL5AQ8N109 375 aa12.57□□□□□ -0.4
LIME1-208ENST00000493265 KIR2DL5BQ8NHK3 375 aa12.57□□□□□ -0.4
LIME1-208ENST00000493265 C2CD4CQ8TF44 421 aa12.57□□□□□ -0.4
LIME1-208ENST00000493265 NDFIP1Q9BT67 221 aa12.57□□□□□ -0.4
LIME1-208ENST00000493265 GPX1P07203 203 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 RNASE4P34096 147 aaKnown RBP12.56□□□□□ -0.4
LIME1-208ENST00000493265 CDKN1BP46527 198 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 PEA15Q15121 130 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 ZNF674Q2M3X9 581 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 Q86TA4 180 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 C11orf52Q96A22 123 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 TVP23CQ96ET8 276 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 FMC1Q96HJ9 113 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 C8orf49Q96NF6 230 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 RETNQ9HD89 108 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 TREM1Q9NP99 234 aa12.56□□□□□ -0.4
LIME1-208ENST00000493265 IGHV3OR16-12A0A075B7B8 117 aa12.55□□□□□ -0.4
LIME1-208ENST00000493265 RAB19A4D1S5 217 aa12.55□□□□□ -0.4
LIME1-208ENST00000493265 RPL35P42766 123 aaKnown RBP12.55□□□□□ -0.4
LIME1-208ENST00000493265 BTN1A1Q13410 526 aa12.55□□□□□ -0.4
LIME1-208ENST00000493265 TMEM183BQ1AE95 376 aa12.55□□□□□ -0.4
LIME1-208ENST00000493265 PRR9Q5T870 116 aa12.55□□□□□ -0.4
LIME1-208ENST00000493265 NHLRC2Q8NBF2 726 aa12.55□□□□□ -0.4
LIME1-208ENST00000493265 FAM19A4Q96LR4 140 aa12.55□□□□□ -0.4
LIME1-208ENST00000493265 ODF3Q96PU9 254 aa12.55□□□□□ -0.4
LIME1-208ENST00000493265 C1QTNF4Q9BXJ3 329 aa12.55□□□□□ -0.4
LIME1-208ENST00000493265 TRAV12-3A0A0B4J271 114 aa12.54□□□□□ -0.4
LIME1-208ENST00000493265 UBE2CO00762 179 aa12.54□□□□□ -0.4
LIME1-208ENST00000493265 INSP01308 110 aa12.54□□□□□ -0.4
LIME1-208ENST00000493265 AMBPP02760 352 aa12.54□□□□□ -0.4
LIME1-208ENST00000493265 SRP19P09132 144 aaKnown RBP12.54□□□□□ -0.4
LIME1-208ENST00000493265 GFI1BQ5VTD9 330 aa12.54□□□□□ -0.4
LIME1-208ENST00000493265 ZFAND2AQ8N6M9 145 aa12.54□□□□□ -0.4
LIME1-208ENST00000493265 KLF12Q9Y4X4 402 aa12.54□□□□□ -0.4
LIME1-208ENST00000493265 FBLL1A6NHQ2 334 aaKnown RBP12.53□□□□□ -0.4
LIME1-208ENST00000493265 C9JQL5 133 aa12.53□□□□□ -0.4
LIME1-208ENST00000493265 CRXO43186 299 aaPredicted RBP12.53□□□□□ -0.4
LIME1-208ENST00000493265 S100A9P06702 114 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms