RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 AVPP01185 164 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 GPX1P07203 203 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 SRIP30626 198 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 LCN12Q6JVE5 192 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 OR2D3Q8NGH3 330 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 C18orf32Q8TCD1 76 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 KCNS1Q96KK3 526 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 MS4A10Q96PG2 267 aa8.26□□□□□ -1.09
USP4-214ENST00000491791 MXRA5Q9NR99 2828 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 SONP18583 2426 aaKnown RBP8.25□□□□□ -1.09
USP4-214ENST00000491791 IGHV3OR16-10A0A075B7F0 116 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 A0A0G2JLM5 398 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 A0A1B0GUS0 222 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 LINC00587B1AMM8 73 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 SPINK4O60575 86 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 CT45A10P0DMU9 189 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 RPS20P60866 119 aaKnown RBP8.25□□□□□ -1.09
USP4-214ENST00000491791 SLC35B1P78383 322 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 RIGQ13278 110 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 CDPF1Q6NVV7 123 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 ZNF493Q6ZR52 646 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 TCF24Q7RTU0 167 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 GLMPQ8WWB7 406 aa8.25□□□□□ -1.09
USP4-214ENST00000491791 NOL4LQ96MY1 436 aaPredicted RBP8.25□□□□□ -1.09
USP4-214ENST00000491791 A0A1B0GUT8 65 aa8.24□□□□□ -1.09
USP4-214ENST00000491791 A0A1W2PS18 150 aa8.24□□□□□ -1.09
USP4-214ENST00000491791 TRGV3P03979 118 aa8.24□□□□□ -1.09
USP4-214ENST00000491791 BMI1P35226 326 aa8.24□□□□□ -1.09
USP4-214ENST00000491791 Q6ZWC4 215 aa8.24□□□□□ -1.09
USP4-214ENST00000491791 LENEPQ9Y5L5 61 aa8.24□□□□□ -1.09
USP4-214ENST00000491791 FBN1P35555 2871 aaKnown RBP8.24□□□□□ -1.09
USP4-214ENST00000491791 LOC102724200A0A096LPH7 203 aaPredicted RBP8.23□□□□□ -1.09
USP4-214ENST00000491791 TRAV8-2A0A0B4J237 113 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 F2Z2F3 143 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 TSTD3H0UI37 97 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 K7EMT4 169 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 ZNF324O75467 553 aaPredicted RBP8.23□□□□□ -1.09
USP4-214ENST00000491791 ARL3P36405 182 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 CTRLP40313 264 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 C9orf47Q6ZRZ4 202 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 SIGLECL1Q8N7X8 197 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 PGLYRP4Q96LB8 373 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 CNFNQ9BYD5 112 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 NAGKQ9UJ70 344 aa8.23□□□□□ -1.09
USP4-214ENST00000491791 IGKV2-40A0A087WW87 121 aaPredicted RBP8.22□□□□□ -1.09
USP4-214ENST00000491791 RNF223E7ERA6 249 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 SH2D1AO60880 128 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 IGKV2D-40P01614 121 aaPredicted RBP8.22□□□□□ -1.09
USP4-214ENST00000491791 IGLC6P0CF74 106 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 RAB4AP20338 218 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 BLCAPP62952 87 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 KIAA1644Q3SXP7 199 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 TEX43Q6ZNM6 134 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 ZNF575Q86XF7 245 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 TMEM158Q8WZ71 300 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 CHCHD1Q96BP2 118 aaKnown RBP8.22□□□□□ -1.09
USP4-214ENST00000491791 C8orf49Q96NF6 230 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 VGLL1Q99990 258 aa8.22□□□□□ -1.09
USP4-214ENST00000491791 TRBV7-9A0A0J9YWB2 115 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 TMEM189A5PLL7 270 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 FABP5P3A8MUU1 101 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 PMCHP20382 165 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 PSMB8P28062 276 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 CAMPP49913 170 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 LY6EQ16553 131 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 LINC01559Q495D7 138 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 SAMD13Q5VXD3 122 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 C8orf86Q6ZUL3 223 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 NIT1Q86X76 327 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 ZNF664Q8N3J9 261 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 RCHY1Q96PM5 261 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 ASCL2Q99929 193 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 SAMD10Q9BYL1 202 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 YAE1D1Q9NRH1 226 aa8.21□□□□□ -1.1
USP4-214ENST00000491791 SOCS3O14543 225 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 CD5LO43866 347 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 IGHV4-31P0DP07 118 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 HIST1H1AQ02539 215 aaPredicted RBP8.2□□□□□ -1.1
USP4-214ENST00000491791 FOXE3Q13461 319 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 DEFB112Q30KQ8 113 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 C9orf152Q5JTZ5 239 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 Q6YL49 198 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 GPHB5Q86YW7 130 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 RNF152Q8N8N0 203 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 Q8N976 141 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 MAPK1IP1LQ8NDC0 245 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 MYOZ3Q8TDC0 251 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 BORCS7Q96B45 105 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 AGPAT4-IT1Q9H0P7 198 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 NRN1Q9NPD7 142 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 U3KQK5 164 aa8.2□□□□□ -1.1
USP4-214ENST00000491791 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.19□□□□□ -1.15e-7■■■■■ 49.5
USP4-214ENST00000491791 KIR2DL5BA0A0G2JN68 375 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 KIR2DL5BA0A0G2JPC4 375 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 PRAC2D3DTV9 90 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 OR5AL1P0C617 328 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 ARMS2P0C7Q2 107 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 HLA-DMBP28068 263 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 DDTP30046 118 aa8.19□□□□□ -1.1
USP4-214ENST00000491791 AMTP48728 403 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms