RNA–Protein interactions for RNA: ENST00000489629.1

CPSF3-205, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 3

Gene CPSF3, Length 547 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-205ENST00000489629 FSIP2Q5CZC0 6907 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 E9PCH4 1651 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 DNAH14Q0VDD8 3507 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 TECPR2O15040 1411 aa0.55□□□□□ -2.32
CPSF3-205ENST00000489629 LAMA4Q16363 1823 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 SMG1Q96Q15 3661 aaKnown RBP0.54□□□□□ -2.32
CPSF3-205ENST00000489629 SHANK2Q9UPX8 1470 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 MAPKBP1O60336 1514 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 NF1P21359 2839 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 MEGF8Q7Z7M0 2845 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 TRPM1Q7Z4N2 1603 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 PHRF1Q9P1Y6 1649 aaKnown RBP0.54□□□□□ -2.32
CPSF3-205ENST00000489629 MACF1Q9UPN3 7388 aaKnown RBP0.54□□□□□ -2.32
CPSF3-205ENST00000489629 MTORP42345 2549 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 NBPF19A0A087WUL8 3843 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 TRAV10A0A0B4J240 114 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 M0R233 179 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 RER1O15258 196 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 APOA2P02652 100 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 DSCR4P56555 118 aaPredicted RBP0.54□□□□□ -2.32
CPSF3-205ENST00000489629 HBBP68871 147 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 CDK6Q00534 326 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 EIF3IQ13347 325 aaKnown RBP0.54□□□□□ -2.32
CPSF3-205ENST00000489629 RTL8BQ17RB0 113 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 HRCT1Q6UXD1 115 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 STX12Q86Y82 276 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 PRR15Q8IV56 129 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 ST6GALNAC3Q8NDV1 305 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 OR5D16Q8NGK9 328 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 OR5D14Q8NGL3 314 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 RAB37Q96AX2 223 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 BORCS8Q96FH0 119 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 HYLS1Q96M11 299 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 LINC00052Q96N35 136 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 ZNF714Q96N38 554 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 RTL8AQ9BWD3 113 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 MYO15AQ9UKN7 3530 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 RBBP6Q7Z6E9 1792 aaKnown RBP0.54□□□□□ -2.32
CPSF3-205ENST00000489629 ROCK1Q13464 1354 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 TRPM7Q96QT4 1865 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 LAMA3Q16787 3333 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 FAT4Q6V0I7 4981 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 CELSR1Q9NYQ6 3014 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 CLASP1Q7Z460 1538 aa0.54□□□□□ -2.32
CPSF3-205ENST00000489629 USP9YO00507 2555 aaPredicted RBP0.53□□□□□ -2.32
CPSF3-205ENST00000489629 NSD1Q96L73 2696 aaPredicted RBP0.53□□□□□ -2.32
CPSF3-205ENST00000489629 ZCCHC11Q5TAX3 1644 aaKnown RBP0.53□□□□□ -2.32
CPSF3-205ENST00000489629 TGP01266 2768 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 KIF21AQ7Z4S6 1674 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 MXRA5Q9NR99 2828 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 ZANQ9Y493 2812 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 PTPRZ1P23471 2315 aaPredicted RBP0.53□□□□□ -2.32
CPSF3-205ENST00000489629 A0A087WSZ3 146 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 TRBV6-4A0A1B0GX49 114 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 TRDV1A0A1B0GX56 115 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 C5orf67F2Z3F1 127 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 IFNA14P01570 189 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 RPL7P18124 248 aaKnown RBP0.53□□□□□ -2.32
CPSF3-205ENST00000489629 RAB5CP51148 216 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 MYL5Q02045 173 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 KLRD1Q13241 179 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 DEFB123Q8N688 67 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 GRPEL2Q8TAA5 225 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 TP53RKQ96S44 253 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 SELENOSQ9BQE4 189 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 LINC00467Q9BRT7 94 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 RASL12Q9NYN1 266 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 NAT8BQ9UHF3 227 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 NUBP2Q9Y5Y2 271 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 AHNAKQ09666 5890 aaKnown RBP0.53□□□□□ -2.32
CPSF3-205ENST00000489629 BSNQ9UPA5 3926 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 RFX7Q2KHR2 1363 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 WDFY3Q8IZQ1 3526 aa0.53□□□□□ -2.32
CPSF3-205ENST00000489629 PRUNE2Q8WUY3 3088 aa0.53□□□□□ -2.33
CPSF3-205ENST00000489629 VPS13AQ96RL7 3174 aa0.53□□□□□ -2.33
CPSF3-205ENST00000489629 CREBBPQ92793 2442 aa0.53□□□□□ -2.33
CPSF3-205ENST00000489629 DCHS1Q96JQ0 3298 aa0.53□□□□□ -2.33
CPSF3-205ENST00000489629 TLN2Q9Y4G6 2542 aa0.53□□□□□ -2.33
CPSF3-205ENST00000489629 MYH1P12882 1939 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 PCNX1Q96RV3 2341 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 IGHV1-58A0A0C4DH39 117 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 C9orf170A2RU37 121 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 OR2T8A6NH00 312 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 C17orf112F2Z3M2 114 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 H0YJX3 145 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 GABARAPH6UMI1 98 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 HIST1H2BKO60814 126 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 ERC2-IT1O76042 136 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 DNAL4O96015 105 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 HIST1H2BJP06899 126 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 OR10J4P0C629 311 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 CXCL8P10145 99 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 S100A11P31949 105 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 MPV17LQ2QL34 196 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 GDF5OSQ5U4N7 250 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 C4orf22Q6V702 233 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 PSMF1Q92530 271 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 TMEM70Q9BUB7 260 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 OR2H1Q9GZK4 316 aa0.52□□□□□ -2.33
CPSF3-205ENST00000489629 NDUFAF1Q9Y375 327 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms