RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-212ENST00000488896 ALPK3Q96L96 1907 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 TRBV30A0A0K0K1B3 111 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 PHGR1C9JFL3 82 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 TSTD3H0UI37 97 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 H0YJX3 145 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 SLC25A4P12235 298 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 IL7P13232 177 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 RPL7P18124 248 aaKnown RBP0.45□□□□□ -2.34
PTPN4-212ENST00000488896 GTF2A1P52655 376 aaPredicted RBP0.45□□□□□ -2.34
PTPN4-212ENST00000488896 MAXP61244 160 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 LSM3P62310 102 aaKnown RBP0.45□□□□□ -2.34
PTPN4-212ENST00000488896 BLCAPP62952 87 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 IQCJQ1A5X6 159 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 TMEM78Q5T7P6 136 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 GLIPR1L1Q6UWM5 242 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 ZCCHC23Q6ZST2 131 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 PRR15Q8IV56 129 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 OR9Q1Q8NGQ5 310 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 CLEC2BQ92478 149 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 MCEEQ96PE7 176 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 NABP2Q9BQ15 211 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 SMIM7Q9BQ49 75 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 CALML5Q9NZT1 146 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 NUP210LQ5VU65 1888 aa0.45□□□□□ -2.34
PTPN4-212ENST00000488896 CECR2Q9BXF3 1484 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 TRBV27A0A0K0K1C4 114 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 A0A1W2PPB8 328 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 A0A1W2PRS3 328 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 ARL5CA6NH57 179 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 KIR3DP1A8MWS1 328 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 CDC42EP2O14613 210 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 EDF1O60869 148 aaKnown RBP0.44□□□□□ -2.34
PTPN4-212ENST00000488896 FAM107AO95990 144 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 PAEPP09466 180 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 CMPK1P30085 196 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 CKS2P33552 79 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 PCBD1P61457 104 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 QRFPP83859 136 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 LINC00269Q8N2A0 174 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 THEM6Q8WUY1 208 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 CCDC115Q96NT0 180 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 CIB3Q96Q77 187 aaPredicted RBP0.44□□□□□ -2.34
PTPN4-212ENST00000488896 CENPHQ9H3R5 247 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 CBLN4Q9NTU7 201 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 COMMD3Q9UBI1 195 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 MED31Q9Y3C7 131 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 TECPR2O15040 1411 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 YTHDC2Q9H6S0 1430 aaKnown RBP0.44□□□□□ -2.34
PTPN4-212ENST00000488896 PLXNA4Q9HCM2 1894 aa0.44□□□□□ -2.34
PTPN4-212ENST00000488896 SIP14410 1827 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 IGHV1-24A0A0C4DH33 117 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 LOC107986453A0A1B0GWG9 222 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 GNG14A0A1W2PPG7 69 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 TMEM30CPA0ZSE6 113 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 TMEM189A5PLL7 270 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 IGHV3-33P01772 117 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 RPS3P23396 243 aaKnown RBP eCLIP0.43□□□□□ -2.34
PTPN4-212ENST00000488896 SPINT3P49223 89 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 POLR2HP52434 150 aaKnown RBP0.43□□□□□ -2.34
PTPN4-212ENST00000488896 PSPHP78330 225 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 KRTAP21-1Q3LI58 79 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 SPINK9Q5DT21 86 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 CSAG1Q6PB30 78 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 Q6ZQY7 126 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 SKA2Q8WVK7 121 aaPredicted RBP0.43□□□□□ -2.34
PTPN4-212ENST00000488896 DIRC1Q969H9 104 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 MRPL36Q9P0J6 103 aaKnown RBP0.43□□□□□ -2.34
PTPN4-212ENST00000488896 HSPB8Q9UJY1 196 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 ADGRB2O60241 1585 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 ROCK1Q13464 1354 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 RTL9Q8NET4 1388 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 E9PCH4 1651 aa0.43□□□□□ -2.34
PTPN4-212ENST00000488896 CAMSAP1Q5T5Y3 1602 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 CAMSAP2Q08AD1 1489 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 DSPPQ9NZW4 1301 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 NUP210Q8TEM1 1887 aaPredicted RBP0.42□□□□□ -2.34
PTPN4-212ENST00000488896 CD109Q6YHK3 1445 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 TRAV17A0A0B4J275 112 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 LOC107984640A0A0U1RRK4 108 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 PRORSD1PA6NEY8 169 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 IGKCP01834 107 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 HBDP02042 147 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 MT-ND4LP03901 98 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 TFF1P04155 84 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 GYPBP06028 91 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 SAA1P0DJI8 122 aaPredicted RBP0.42□□□□□ -2.34
PTPN4-212ENST00000488896 ETV6P41212 452 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 SRP9P49458 86 aaKnown RBP0.42□□□□□ -2.34
PTPN4-212ENST00000488896 DNAJB13P59910 316 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 RPL37AP61513 92 aaKnown RBP0.42□□□□□ -2.34
PTPN4-212ENST00000488896 TFAMQ00059 246 aaKnown RBP0.42□□□□□ -2.34
PTPN4-212ENST00000488896 C6orf52Q5T4I8 152 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 TMEM244Q5VVB8 128 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 UNQ5815/PRO19632Q6UWF5 114 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 LINC00575Q6W349 94 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 IDO2Q6ZQW0 420 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 LINC00299Q6ZSB3 139 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 TCTEX1D1Q8N7M0 179 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 OR8J3Q8NGG0 315 aa0.42□□□□□ -2.34
PTPN4-212ENST00000488896 OR51A4Q8NGJ6 313 aa0.42□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms