RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 C9orf118A6NHY6 69 aa9.84□□□□□ -0.83
SHROOM3-208ENST00000486758 TIMM23O14925 209 aa9.84□□□□□ -0.83
SHROOM3-208ENST00000486758 NDUFA3O95167 84 aa9.84□□□□□ -0.83
SHROOM3-208ENST00000486758 LEPP41159 167 aa9.84□□□□□ -0.83
SHROOM3-208ENST00000486758 URB1-AS1Q96HZ7 61 aa9.84□□□□□ -0.83
SHROOM3-208ENST00000486758 NDUFA4L2Q9NRX3 87 aa9.84□□□□□ -0.83
SHROOM3-208ENST00000486758 A0A1B0GWB2 263 aa9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 IGHV1-8P0DP01 117 aa9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 FAM120AOSQ5T036 256 aa9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 PPP1R27Q86WC6 154 aa9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 ZNF418Q8TF45 676 aaPredicted RBP9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 CTSZQ9UBR2 303 aa9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 TSSC4Q9Y5U2 329 aaPredicted RBP9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 SMAD7O15105 426 aaKnown RBP9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 SLC25A39Q9BZJ4 359 aaPredicted RBP9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 LINC00527Q9UJ94 153 aa9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 APOBEC3AP31941 199 aaPredicted RBP9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 ADAMTSL5Q6ZMM2 481 aa9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 TMEM75Q8N9X5 138 aa9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 WIPF2Q8TF74 440 aaPredicted RBP9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 NDFIP1Q9BT67 221 aa9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 SOX21Q9Y651 276 aaPredicted RBP9.83□□□□□ -0.84
SHROOM3-208ENST00000486758 IGLV3-9A0A075B6K5 115 aa9.82□□□□□ -0.84
SHROOM3-208ENST00000486758 RAB1BQ9H0U4 201 aa9.82□□□□□ -0.84
SHROOM3-208ENST00000486758 SRSF9Q13242 221 aaKnown RBP eCLIP9.82□□□□□ -0.84
SHROOM3-208ENST00000486758 C1orf122Q6ZSJ8 110 aa9.82□□□□□ -0.84
SHROOM3-208ENST00000486758 SIGMAR1Q99720 223 aa9.82□□□□□ -0.84
SHROOM3-208ENST00000486758 MAP1LC3AQ9H492 121 aa9.82□□□□□ -0.84
SHROOM3-208ENST00000486758 SIGLEC8Q9NYZ4 499 aa9.82□□□□□ -0.84
SHROOM3-208ENST00000486758 AZU1P20160 251 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 JMJD8Q96S16 334 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 K7EP34 96 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 SCGB1C2P0DMR2 95 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 ZC2HC1BQ5TFG8 222 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 SH2D6Q7Z4S9 175 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 ZNF502Q8TBZ5 544 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 NEU4Q8WWR8 484 aaPredicted RBP9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 SETXQ7Z333 2677 aaKnown RBP9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 H7C2G1 150 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 OTORQ9NRC9 128 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 DOPEY1Q5JWR5 2465 aa9.81□□□□□ -0.84
SHROOM3-208ENST00000486758 LOXP28300 417 aaPredicted RBP9.8□□□□□ -0.84
SHROOM3-208ENST00000486758 C8orf46Q8TAG6 207 aa9.8□□□□□ -0.84
SHROOM3-208ENST00000486758 H3BMG7 143 aa9.8□□□□□ -0.84
SHROOM3-208ENST00000486758 LHBP01229 141 aa9.8□□□□□ -0.84
SHROOM3-208ENST00000486758 LGALS7P47929 136 aa9.8□□□□□ -0.84
SHROOM3-208ENST00000486758 MYOZ3Q8TDC0 251 aa9.8□□□□□ -0.84
SHROOM3-208ENST00000486758 ZNF479Q96JC4 524 aa9.8□□□□□ -0.84
SHROOM3-208ENST00000486758 MTORP42345 2549 aa9.8□□□□□ -0.84
SHROOM3-208ENST00000486758 A0A1W2PPM0 123 aa9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 H3BRM9 83 aa9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 CLEC3BP05452 202 aa9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 ARPC1AQ92747 370 aa9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 APOMO95445 188 aa9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 ZNF672Q499Z4 452 aaPredicted RBP9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 RUSC1-AS1Q66K80 236 aa9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 PTPRBP23467 1997 aa9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 IGHV1-3A0A0C4DH29 117 aa9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 B9A039 149 aa9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 S100A4P26447 101 aaKnown RBP9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 ATP5IP56385 69 aaPredicted RBP9.79□□□□□ -0.84
SHROOM3-208ENST00000486758 A0A1B0GV72 72 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 NPYP01303 97 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 LTAP01374 205 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 SPANXN1Q5VSR9 72 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 OR4X2Q8NGF9 303 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 TMEM167AQ8TBQ9 72 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 A0A1B0GXF2 115 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 THBDP07204 575 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 FXYD2P54710 66 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 OR5A1Q8NGJ0 315 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 CHAC1Q9BUX1 264 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 FNDC10F2Z333 226 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 NDUFS7O75251 213 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 RPL7P18124 248 aaKnown RBP9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 CEACAM3P40198 252 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 LINC01545Q5VT33 79 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 IGFL2Q6UWQ7 119 aa9.78□□□□□ -0.84
SHROOM3-208ENST00000486758 GATA1P15976 413 aaPredicted RBP9.77□□□□□ -0.84
SHROOM3-208ENST00000486758 GATA4P43694 442 aa9.77□□□□□ -0.84
SHROOM3-208ENST00000486758 RNF125Q96EQ8 232 aa9.77□□□□□ -0.85
SHROOM3-208ENST00000486758 MSRB1Q9NZV6 116 aa9.77□□□□□ -0.85
SHROOM3-208ENST00000486758 CYSLTR1Q9Y271 337 aa9.77□□□□□ -0.85
SHROOM3-208ENST00000486758 SIGLEC9Q9Y336 463 aa9.77□□□□□ -0.85
SHROOM3-208ENST00000486758 TRAV40A0A0B4J280 105 aa9.77□□□□□ -0.85
SHROOM3-208ENST00000486758 MGPP08493 103 aa9.77□□□□□ -0.85
SHROOM3-208ENST00000486758 WFDC2Q14508 124 aa9.77□□□□□ -0.85
SHROOM3-208ENST00000486758 OR9G4Q8NGQ1 327 aa9.77□□□□□ -0.85
SHROOM3-208ENST00000486758 MRPL16Q9NX20 251 aaKnown RBP9.77□□□□□ -0.85
SHROOM3-208ENST00000486758 NACAE9PAV3 2078 aa9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 SH2D1AO60880 128 aa9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 SCGB2A1O75556 95 aa9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 MRPL51Q4U2R6 128 aaKnown RBP9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 C2orf91Q6ZV80 131 aa9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 DPM3Q9P2X0 92 aa9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 IGKV1D-37A0A075B6S9 117 aa9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 SPRY2O43597 315 aa9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 TTC9CQ8N5M4 171 aa9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 BBC3Q96PG8 261 aaPredicted RBP9.76□□□□□ -0.85
SHROOM3-208ENST00000486758 NPFFR1Q9GZQ6 430 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms