RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 HIST2H2BEQ16778 126 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 ZNF181Q2M3W8 571 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.73□□□□□ -2.13
VPS41-213ENST00000485955 LDLRAD2Q5SZI1 272 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 GLIPR1L1Q6UWM5 242 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 CTAGE3PQ8IX95 158 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 ACBD7Q8N6N7 88 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 TCTEX1D1Q8N7M0 179 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 TERB2Q8NHR7 220 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 RPS4Y2Q8TD47 263 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 C2orf15Q8WU43 125 aaKnown RBP1.73□□□□□ -2.13
VPS41-213ENST00000485955 C15orf40Q8WUR7 153 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 SFT2D1Q8WV19 159 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 HIST1H2BHQ93079 126 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 MAL2Q969L2 176 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 CAMK2N2Q96S95 79 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 HIST1H2BNQ99877 126 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 HIST1H2BMQ99879 126 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 EFCAB1Q9HAE3 211 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 C8orf17Q9NRJ1 99 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 ZNRD1Q9P1U0 126 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 CKLFQ9UBR5 152 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 BAIAP2Q9UQB8 552 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 COL4A2P08572 1712 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 DOCK6Q96HP0 2047 aa1.73□□□□□ -2.13
VPS41-213ENST00000485955 PRRC2CQ9Y520 2896 aaKnown RBP1.73□□□□□ -2.13
VPS41-213ENST00000485955 LCTP09848 1927 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 IGKV1-12A0A0C4DH73 117 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 TRBV7-6A0A0J9YX20 115 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 IRGMA1A4Y4 181 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 MEIS3P1A6NDR6 274 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 GGT3PA6NGU5 568 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 TMEM212A6NML5 194 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 A8MWL6 223 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 GGTLC3B5MD39 225 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 M0R143 59 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 SOCS1O15524 211 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 IGKV1D-12P01611 117 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 MT-ND4LP03901 98 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 GPX1P07203 203 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 SRP19P09132 144 aaKnown RBP1.72□□□□□ -2.13
VPS41-213ENST00000485955 PAEPP09466 180 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 ZNF688P0C7X2 276 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 NFYBP25208 207 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 CASP1P29466 404 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 SDC2P34741 201 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 EIF2B2P49770 351 aaKnown RBP1.72□□□□□ -2.13
VPS41-213ENST00000485955 TMBIM6P55061 237 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 RBM11P57052 281 aaKnown RBP1.72□□□□□ -2.13
VPS41-213ENST00000485955 PDGFRLQ15198 375 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 MSMO1Q15800 293 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 RRN3P1Q2M238 152 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 CCSMST1Q4G0I0 132 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 C1orf140Q5VVS0 124 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 AMMECR1LQ6DCA0 310 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 LAIR2Q6ISS4 152 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 TMEM14EPQ6UXP3 125 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 LCA10Q71F78 164 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 SCXQ7RTU7 201 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 GPHB5Q86YW7 130 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 SNX29P2Q8IUI4 249 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 C10orf126Q8N4M7 172 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 FER1L6-AS1Q8NA97 138 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 ZNF436-AS1Q8NC38 126 aaPredicted RBP1.72□□□□□ -2.13
VPS41-213ENST00000485955 OR5A2Q8NGI9 324 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 OR4K13Q8NH42 304 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 OR4A5Q8NH83 315 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 H1FXQ92522 213 aaKnown RBP1.72□□□□□ -2.13
VPS41-213ENST00000485955 MGLLQ99685 303 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 ZNF286AQ9HBT8 521 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 OTORQ9NRC9 128 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 NAT8Q9UHE5 227 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 SOX21Q9Y651 276 aaPredicted RBP1.72□□□□□ -2.13
VPS41-213ENST00000485955 FOCADQ5VW36 1801 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 MYH10P35580 1976 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 ANK3Q12955 4377 aaKnown RBP1.72□□□□□ -2.13
VPS41-213ENST00000485955 MYH13Q9UKX3 1938 aa1.72□□□□□ -2.13
VPS41-213ENST00000485955 DSPPQ9NZW4 1301 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 TRRAPQ9Y4A5 3859 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 KIAA1109Q2LD37 5005 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 IGHV7-4-1A0A0J9YVY3 117 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 IGHV5-10-1A0A0J9YXX1 117 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 SPAARA0A1B0GVQ0 90 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 TMEM218A2RU14 115 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 C1orf196B1AJZ1 125 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 C9JCJ5 164 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 ZNF670-ZNF695F2Z2N8 137 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 H0YJW9 148 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 I3L521 148 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 TAX1BP3O14907 124 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 NPFFO15130 113 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 LYZL6O75951 148 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 IGLC6P0CF74 106 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 ZNF728P0DKX0 622 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 LINC00694P0DN24 101 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 ATP6V0CP27449 155 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 GUCA1AP43080 201 aaPredicted RBP1.71□□□□□ -2.14
VPS41-213ENST00000485955 CMC4P56277 68 aaPredicted RBP1.71□□□□□ -2.14
VPS41-213ENST00000485955 TAS2R45P59539 299 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 CDK6Q00534 326 aa1.71□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms