RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 ZNF726P1Q15940 193 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 RRN3P1Q2M238 152 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 AKR1C8PQ5T2L2 129 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 GFI1BQ5VTD9 330 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 RXFP4Q8TDU9 374 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 AGPAT4-IT1Q9H0P7 198 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 TMEM167BQ9NRX6 74 aa11.42□□□□□ -0.58
UPF3A-208ENST00000484246 TRAV12-2A0A075B6T6 113 aa11.41□□□□□ -0.58
UPF3A-208ENST00000484246 IGHV3OR16-12A0A075B7B8 117 aa11.41□□□□□ -0.58
UPF3A-208ENST00000484246 IGKV2-40A0A087WW87 121 aaPredicted RBP11.41□□□□□ -0.58
UPF3A-208ENST00000484246 TEX48A0A1B0GUV7 120 aa11.41□□□□□ -0.58
UPF3A-208ENST00000484246 HMGB3O15347 200 aaKnown RBP11.41□□□□□ -0.58
UPF3A-208ENST00000484246 IGKV2D-40P01614 121 aaPredicted RBP11.41□□□□□ -0.58
UPF3A-208ENST00000484246 EIF5AP63241 154 aaKnown RBP11.41□□□□□ -0.58
UPF3A-208ENST00000484246 FAM74A1Q5RGS3 127 aa11.41□□□□□ -0.58
UPF3A-208ENST00000484246 SSX7Q7RTT5 188 aa11.41□□□□□ -0.58
UPF3A-208ENST00000484246 STOML3Q8TAV4 291 aa11.41□□□□□ -0.58
UPF3A-208ENST00000484246 TMEM208Q9BTX3 173 aa11.41□□□□□ -0.58
UPF3A-208ENST00000484246 CXorf65A6NEN9 183 aa11.4□□□□□ -0.58
UPF3A-208ENST00000484246 UMAD1C9J7I0 102 aa11.4□□□□□ -0.58
UPF3A-208ENST00000484246 H7BYZ3 331 aa11.4□□□□□ -0.58
UPF3A-208ENST00000484246 TAS2R60P59551 318 aa11.4□□□□□ -0.58
UPF3A-208ENST00000484246 TMUB2Q71RG4 321 aa11.4□□□□□ -0.58
UPF3A-208ENST00000484246 AKAP14Q86UN6 197 aa11.4□□□□□ -0.58
UPF3A-208ENST00000484246 TMED6Q8WW62 240 aa11.4□□□□□ -0.58
UPF3A-208ENST00000484246 ZNF471Q9BX82 626 aaPredicted RBP11.4□□□□□ -0.58
UPF3A-208ENST00000484246 ZNF492Q9P255 531 aa11.4□□□□□ -0.58
UPF3A-208ENST00000484246 LENEPQ9Y5L5 61 aa11.4□□□□□ -0.58
UPF3A-208ENST00000484246 STARD9Q9P2P6 4700 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 LOC102723971A0A1B0GUV8 181 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 DIRC3C9JPN6 131 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 NANOS2P60321 138 aaKnown RBP11.39□□□□□ -0.59
UPF3A-208ENST00000484246 ERCC8Q13216 396 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 KIR3DS1Q14943 382 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 TMEM78Q5T7P6 136 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 CEMP1Q6PRD7 247 aaPredicted RBP11.39□□□□□ -0.59
UPF3A-208ENST00000484246 ZFAND2AQ8N6M9 145 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 HYLS1Q96M11 299 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 VGLL1Q99990 258 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 CELA1Q9UNI1 258 aa11.39□□□□□ -0.59
UPF3A-208ENST00000484246 SERTM2A0A1B0GWG4 89 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 PGPA6NDG6 321 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 C11orf94C9JXX5 98 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 PFDN1O60925 122 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 ZNF138P52744 262 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 PMS2P11Q13670 270 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 C5orf17Q8NAS9 161 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 CMTM2Q8TAZ6 248 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 PHLDA1Q8WV24 401 aaPredicted RBP11.38□□□□□ -0.59
UPF3A-208ENST00000484246 DKK2Q9UBU2 259 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 CSMD3Q7Z407 3707 aa11.38□□□□□ -0.59
UPF3A-208ENST00000484246 A0A1W2PRE2 83 aa11.37□□□□□ -0.59
UPF3A-208ENST00000484246 PLAC8L1A1L4L8 177 aa11.37□□□□□ -0.59
UPF3A-208ENST00000484246 C7orf71A4D174 169 aa11.37□□□□□ -0.59
UPF3A-208ENST00000484246 SPART-AS1P0CW21 52 aa11.37□□□□□ -0.59
UPF3A-208ENST00000484246 TPT1P13693 172 aaKnown RBP11.37□□□□□ -0.59
UPF3A-208ENST00000484246 LGALSLQ3ZCW2 172 aaPredicted RBP11.37□□□□□ -0.59
UPF3A-208ENST00000484246 DPPA3Q6W0C5 159 aa11.37□□□□□ -0.59
UPF3A-208ENST00000484246 ZNF493Q6ZR52 646 aa11.37□□□□□ -0.59
UPF3A-208ENST00000484246 LINC01587Q99440 93 aa11.37□□□□□ -0.59
UPF3A-208ENST00000484246 LINC00467Q9BRT7 94 aa11.37□□□□□ -0.59
UPF3A-208ENST00000484246 EPPK1P58107 5090 aaKnown RBP11.37□□□□□ -0.59
UPF3A-208ENST00000484246 DYNC2H1Q8NCM8 4307 aaKnown RBP11.36□□□□□ -0.59
UPF3A-208ENST00000484246 hCG_2014768A0A024R1R8 64 aa11.36□□□□□ -0.59
UPF3A-208ENST00000484246 MAP1LC3B2A6NCE7 125 aa11.36□□□□□ -0.59
UPF3A-208ENST00000484246 ZNF705GA8MUZ8 300 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-208ENST00000484246 GGTLC3B5MD39 225 aa11.36□□□□□ -0.59
UPF3A-208ENST00000484246 C12orf74Q32Q52 190 aa11.36□□□□□ -0.59
UPF3A-208ENST00000484246 RNASE8Q8TDE3 154 aaKnown RBP11.36□□□□□ -0.59
UPF3A-208ENST00000484246 TMEM263Q8WUH6 116 aaKnown RBP11.36□□□□□ -0.59
UPF3A-208ENST00000484246 C16orf74Q96GX8 76 aa11.36□□□□□ -0.59
UPF3A-208ENST00000484246 PYGO2Q9BRQ0 406 aa11.36□□□□□ -0.59
UPF3A-208ENST00000484246 MAP1LC3BQ9GZQ8 125 aa11.36□□□□□ -0.59
UPF3A-208ENST00000484246 KLK5Q9Y337 293 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-208ENST00000484246 YTHDF2Q9Y5A9 579 aaKnown RBP11.36□□□□□ -0.59
UPF3A-208ENST00000484246 BIRC6Q9NR09 4857 aa11.36□□□□□ -0.59
UPF3A-208ENST00000484246 ZNF324O75467 553 aaPredicted RBP11.35□□□□□ -0.59
UPF3A-208ENST00000484246 Q6ZTC4 211 aa11.35□□□□□ -0.59
UPF3A-208ENST00000484246 Q8TAT8 98 aa11.35□□□□□ -0.59
UPF3A-208ENST00000484246 NIPSNAP3BQ9BS92 247 aa11.35□□□□□ -0.59
UPF3A-208ENST00000484246 ARL2-SNX15V9GYD0 113 aa11.35□□□□□ -0.59
UPF3A-208ENST00000484246 LYRM9A8MSI8 78 aa11.34□□□□□ -0.59
UPF3A-208ENST00000484246 TCRAP04437 139 aa11.34□□□□□ -0.59
UPF3A-208ENST00000484246 CD300CQ08708 224 aa11.34□□□□□ -0.59
UPF3A-208ENST00000484246 BTN1A1Q13410 526 aa11.34□□□□□ -0.59
UPF3A-208ENST00000484246 PRR9Q5T870 116 aa11.34□□□□□ -0.59
UPF3A-208ENST00000484246 FAM222AQ5U5X8 452 aa11.34□□□□□ -0.59
UPF3A-208ENST00000484246 MBD3L1Q8WWY6 194 aa11.34□□□□□ -0.59
UPF3A-208ENST00000484246 NKX6-2Q9C056 277 aaPredicted RBP11.34□□□□□ -0.59
UPF3A-208ENST00000484246 TRAV10A0A0B4J240 114 aa11.33□□□□□ -0.6
UPF3A-208ENST00000484246 TRAV12-3A0A0B4J271 114 aa11.33□□□□□ -0.6
UPF3A-208ENST00000484246 LCE6AA0A183 80 aa11.33□□□□□ -0.6
UPF3A-208ENST00000484246 FBLL1A6NHQ2 334 aaKnown RBP11.33□□□□□ -0.6
UPF3A-208ENST00000484246 GPX1P07203 203 aa11.33□□□□□ -0.6
UPF3A-208ENST00000484246 AZU1P20160 251 aa11.33□□□□□ -0.6
UPF3A-208ENST00000484246 FHITP49789 147 aa11.33□□□□□ -0.6
UPF3A-208ENST00000484246 EMP1P54849 157 aa11.33□□□□□ -0.6
UPF3A-208ENST00000484246 TCTAP57738 103 aa11.33□□□□□ -0.6
UPF3A-208ENST00000484246 EIF5AL1Q6IS14 154 aaKnown RBP11.33□□□□□ -0.6
UPF3A-208ENST00000484246 GOLT1AQ6ZVE7 132 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 138.6 ms