RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 PRSS33Q8NF86 280 aa14.69□□□□□ -0.06
CCDC88B-207ENST00000479965 ZMAT4Q9H898 229 aa14.69□□□□□ -0.06
CCDC88B-207ENST00000479965 NXT2Q9NPJ8 142 aaKnown RBP14.69□□□□□ -0.06
CCDC88B-207ENST00000479965 PVRIGQ6DKI7 326 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 MRAP2Q96G30 205 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 CTSZQ9UBR2 303 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 CYSLTR1Q9Y271 337 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 CD40P25942 277 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 MYOZ3Q8TDC0 251 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 K7EIM0 57 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 ATP5LO75964 103 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 IGHV3-23P01764 117 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 RRN3P1Q2M238 152 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 LINC00311Q8N616 119 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 PIFOQ8TCI5 191 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 IGFBPL1Q8WX77 278 aa14.68□□□□□ -0.06
CCDC88B-207ENST00000479965 RPEQ96AT9 228 aa14.67□□□□□ -0.06
CCDC88B-207ENST00000479965 KLK15Q9H2R5 256 aa14.67□□□□□ -0.06
CCDC88B-207ENST00000479965 IGHV3-35A0A0C4DH35 117 aa14.67□□□□□ -0.06
CCDC88B-207ENST00000479965 NCBP2LA6PVI3 153 aaKnown RBP14.67□□□□□ -0.06
CCDC88B-207ENST00000479965 LOXP28300 417 aaPredicted RBP14.67□□□□□ -0.06
CCDC88B-207ENST00000479965 TRAV26-2A0A0B4J265 109 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 SPINK8P0C7L1 97 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 EFNA4P52798 201 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 TRAV17A0A0B4J275 112 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 C17orf100A8MU93 164 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 ZNF502Q8TBZ5 544 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 ZNF418Q8TF45 676 aaPredicted RBP14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 IGHV1-3A0A0C4DH29 117 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 LOC107984156A0A0G2JMH3 177 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 ARL17AQ8IVW1 177 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 UFC1Q9Y3C8 167 aa14.66□□□□□ -0.06
CCDC88B-207ENST00000479965 SHISA9B4DS77 424 aa14.65□□□□□ -0.06
CCDC88B-207ENST00000479965 MRPS12O15235 138 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-207ENST00000479965 PGPEP1Q9NXJ5 209 aa14.65□□□□□ -0.06
CCDC88B-207ENST00000479965 ZGRF1Q86YA3 2104 aa14.65□□□□□ -0.06
CCDC88B-207ENST00000479965 PSMG4Q5JS54 123 aa14.65□□□□□ -0.06
CCDC88B-207ENST00000479965 DTX2Q86UW9 622 aa14.65□□□□□ -0.06
CCDC88B-207ENST00000479965 C1orf210Q8IVY1 113 aa14.65□□□□□ -0.06
CCDC88B-207ENST00000479965 GLMPQ8WWB7 406 aa14.65□□□□□ -0.06
CCDC88B-207ENST00000479965 MRPL16Q9NX20 251 aaKnown RBP14.65□□□□□ -0.06
CCDC88B-207ENST00000479965 TMEM178BH3BS89 294 aa14.64□□□□□ -0.07
CCDC88B-207ENST00000479965 CRYGBP07316 175 aa14.64□□□□□ -0.07
CCDC88B-207ENST00000479965 TCTEX1D4Q5JR98 221 aa14.64□□□□□ -0.07
CCDC88B-207ENST00000479965 CNOT1A5YKK6 2376 aaKnown RBP14.64□□□□□ -0.07
CCDC88B-207ENST00000479965 IGLC6P0CF74 106 aa14.64□□□□□ -0.07
CCDC88B-207ENST00000479965 ERCC8Q13216 396 aa14.64□□□□□ -0.07
CCDC88B-207ENST00000479965 PRO0461Q9UI25 63 aa14.64□□□□□ -0.07
CCDC88B-207ENST00000479965 CEACAM4O75871 244 aa14.63□□□□□ -0.07
CCDC88B-207ENST00000479965 FOXI1Q12951 378 aa14.63□□□□□ -0.07
CCDC88B-207ENST00000479965 C8orf86Q6ZUL3 223 aa14.63□□□□□ -0.07
CCDC88B-207ENST00000479965 PTH2Q96A98 100 aa14.63□□□□□ -0.07
CCDC88B-207ENST00000479965 MT-ATP8P03928 68 aa14.63□□□□□ -0.07
CCDC88B-207ENST00000479965 PSMB2P49721 201 aa14.63□□□□□ -0.07
CCDC88B-207ENST00000479965 SRSF1Q07955 248 aaKnown RBP eCLIP14.63□□□□□ -0.07
CCDC88B-207ENST00000479965 TMEM155Q4W5P6 130 aa14.63□□□□□ -0.07
CCDC88B-207ENST00000479965 TECTAO75443 2155 aa14.63□□□□□ -0.07
CCDC88B-207ENST00000479965 HOXA3O43365 443 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-207ENST00000479965 TRGV3P03979 118 aa14.62□□□□□ -0.07
CCDC88B-207ENST00000479965 DMXL1Q9Y485 3027 aa14.62□□□□□ -0.07
CCDC88B-207ENST00000479965 COL27A1Q8IZC6 1860 aaPredicted RBP14.62□□□□□ -0.07
CCDC88B-207ENST00000479965 MBD3L4A6NDZ8 208 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 MBD3L3A6NE82 208 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 MBD3L5A6NJ08 208 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 OR11H12B2RN74 326 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 GFRALQ6UXV0 394 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 OR11H1Q8NG94 326 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 OR11H2Q8NH07 326 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 MBD3L2Q8NHZ7 208 aaPredicted RBP14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 MGAQ8IWI9 3026 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 GVINP1Q7Z2Y8 2422 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 TGFAP01135 160 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 PDE6HQ13956 83 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 ADIPOQQ15848 244 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 Q8N8P6 123 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 CACNA1BQ00975 2339 aa14.61□□□□□ -0.07
CCDC88B-207ENST00000479965 FABP5P3A8MUU1 101 aa14.6□□□□□ -0.07
CCDC88B-207ENST00000479965 DLX6P56179 175 aa14.6□□□□□ -0.07
CCDC88B-207ENST00000479965 TAL2Q16559 108 aa14.6□□□□□ -0.07
CCDC88B-207ENST00000479965 ATMQ13315 3056 aa14.6□□□□□ -0.07
CCDC88B-207ENST00000479965 VSTM5A8MXK1 200 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 LAGE3Q14657 143 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 NFE4Q86UQ8 179 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 LINC01549A6NIU2 74 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 C8orf31Q8N9H6 132 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 C1QTNF4Q9BXJ3 329 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 A0A087WX48 190 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 BUB1B-PAK6H3BSN5 160 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 SCGB1D4Q6XE38 83 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 FAM215AQ9Y5M1 114 aa14.59□□□□□ -0.07
CCDC88B-207ENST00000479965 CDIP1Q9H305 208 aa14.58□□□□□ -0.08
CCDC88B-207ENST00000479965 TRBV7-3A0A075B6L6 115 aa14.58□□□□□ -0.08
CCDC88B-207ENST00000479965 TMEM238LA0A1B0GVL6 79 aa14.58□□□□□ -0.08
CCDC88B-207ENST00000479965 CD59P13987 128 aa14.58□□□□□ -0.08
CCDC88B-207ENST00000479965 SRSF9Q13242 221 aaKnown RBP eCLIP14.58□□□□□ -0.08
CCDC88B-207ENST00000479965 MORN3Q6PF18 240 aaPredicted RBP14.58□□□□□ -0.08
CCDC88B-207ENST00000479965 ZNF575Q86XF7 245 aa14.58□□□□□ -0.08
CCDC88B-207ENST00000479965 MYMXA0A1B0GTQ4 84 aa14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 RPL7P18124 248 aaKnown RBP14.57□□□□□ -0.08
CCDC88B-207ENST00000479965 HES1Q14469 280 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms