RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 SELENOKQ9Y6D0 94 aa4.99□□□□□ -1.61
USP48-208ENST00000479177 TRAV2A0A0B4J234 112 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 TMEM218A2RU14 115 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 PGPA6NDG6 321 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 M0R3E3 92 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 PEX7O00628 323 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 SLC25A5P05141 298 aaKnown RBP4.98□□□□□ -1.61
USP48-208ENST00000479177 HLA-DMBP28068 263 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 DEFB114Q30KQ6 69 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 CD300EQ496F6 205 aaPredicted RBP4.98□□□□□ -1.61
USP48-208ENST00000479177 SAMD13Q5VXD3 122 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 TMEM61Q8N0U2 210 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 C3orf56Q8N813 242 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 SPATA3Q8NHX4 192 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 C2CD4CQ8TF44 421 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 DCANP1Q8TF63 244 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 MRPL53Q96EL3 112 aaKnown RBP4.98□□□□□ -1.61
USP48-208ENST00000479177 LINC00052Q96N35 136 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 MS4A6AQ9H2W1 248 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 AAMDCQ9H7C9 122 aa4.98□□□□□ -1.61
USP48-208ENST00000479177 CMYA5Q8N3K9 4069 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 IGKV3-7A0A075B6H7 116 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 TRAV25A0A0B4J276 109 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 K7EQG2 157 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 ISLRO14498 428 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 TSPAN4O14817 238 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 SAP30O75446 220 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 IGLV1-51P01701 117 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 TCRAP04437 139 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 AKR1C3P42330 323 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 CEBPGP53567 150 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 SOHLH1Q5JUK2 328 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 GBGT1Q8N5D6 347 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 RNF182Q8N6D2 247 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 ARL6IP6Q8N6S5 226 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 CMTM2Q8TAZ6 248 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 HIST1H2BAQ96A08 127 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 RPUSD4Q96CM3 377 aaKnown RBP4.97□□□□□ -1.61
USP48-208ENST00000479177 ATG101Q9BSB4 218 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 DERL1Q9BUN8 251 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 PARLQ9H300 379 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 CLEC5AQ9NY25 188 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 EPDR1Q9UM22 224 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 RPH3ALQ9UNE2 315 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 PRELID1Q9Y255 219 aa4.97□□□□□ -1.61
USP48-208ENST00000479177 CARHSP1Q9Y2V2 147 aaKnown RBP4.97□□□□□ -1.61
USP48-208ENST00000479177 TRBV20OR9-2A0A075B6H5 130 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 TRGV11A0A075B6L2 103 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 IGKV2-40A0A087WW87 121 aaPredicted RBP4.96□□□□□ -1.62
USP48-208ENST00000479177 IZUMO1RA6ND01 250 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 ZNF705FA8MVS1 300 aaPredicted RBP4.96□□□□□ -1.62
USP48-208ENST00000479177 KRBOX1C9JBD0 128 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 IGKV2D-40P01614 121 aaPredicted RBP4.96□□□□□ -1.62
USP48-208ENST00000479177 RPL35P42766 123 aaKnown RBP4.96□□□□□ -1.62
USP48-208ENST00000479177 TFPI2P48307 235 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 PSG3Q16557 428 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 C10orf91Q5T1B1 145 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 RBPMS2Q6ZRY4 209 aaKnown RBP4.96□□□□□ -1.62
USP48-208ENST00000479177 GOLT1AQ6ZVE7 132 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 Q86TA4 180 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 FAM24BQ8N5W8 94 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 OR2K2Q8NGT1 345 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 IGF2BP2-AS1Q96M15 143 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 SPAG8Q99932 426 aaPredicted RBP4.96□□□□□ -1.62
USP48-208ENST00000479177 SMIM7Q9BQ49 75 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 SEC11CQ9BY50 192 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 KLF12Q9Y4X4 402 aa4.96□□□□□ -1.62
USP48-208ENST00000479177 AGRNO00468 2067 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 TRAV8-1A0A0A6YYK1 113 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 TRAV34A0A0B4J273 112 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 TRBV6-1A0A0K0K1D8 114 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 SERTM2A0A1B0GWG4 89 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 OR4C46A6NHA9 309 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 ZNF727A8MUV8 499 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 C9JCJ5 164 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 PRAC2D3DTV9 90 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 F8W036 122 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 DNASE2O00115 360 aaPredicted RBP4.95□□□□□ -1.62
USP48-208ENST00000479177 IGLV2-11P01706 119 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 ZNF688P0C7X2 276 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 PRB4P10163 310 aaPredicted RBP4.95□□□□□ -1.62
USP48-208ENST00000479177 ID1P41134 155 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 CSN1S1P47710 185 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 CNN1P51911 297 aaKnown RBP4.95□□□□□ -1.62
USP48-208ENST00000479177 PAFAH1B2P68402 229 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 TMEM183BQ1AE95 376 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 ZNF674Q2M3X9 581 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 FAM74A3Q4VXF1 159 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 CENPWQ5EE01 88 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 LCN12Q6JVE5 192 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 TMEM75Q8N9X5 138 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 ZNF738Q8NE65 137 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 WFDC9Q8NEX5 89 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 FMC1Q96HJ9 113 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 LINC00479Q96M42 142 aa4.95□□□□□ -1.62
USP48-208ENST00000479177 ZNF256Q9Y2P7 627 aaPredicted RBP4.95□□□□□ -1.62
USP48-208ENST00000479177 RBAKDNA6NC62 111 aa4.94□□□□□ -1.62
USP48-208ENST00000479177 K7EQM0 130 aa4.94□□□□□ -1.62
USP48-208ENST00000479177 LTAP01374 205 aa4.94□□□□□ -1.62
USP48-208ENST00000479177 S100A9P06702 114 aaKnown RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms