RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 RAB1BQ9H0U4 201 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 PRORYQ9H606 182 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 OSTCQ9NRP0 149 aa3.97□□□□□ -1.77
CCDC39-204ENST00000476379 SYS1-DBNDD2H3BUS1 97 aa3.96□□□□□ -1.77
CCDC39-204ENST00000476379 UCNP55089 124 aa3.96□□□□□ -1.77
CCDC39-204ENST00000476379 SELENOTP62341 195 aa3.96□□□□□ -1.77
CCDC39-204ENST00000476379 FAM120AOSQ5T036 256 aa3.96□□□□□ -1.77
CCDC39-204ENST00000476379 Q6ZQT7 251 aa3.96□□□□□ -1.77
CCDC39-204ENST00000476379 Q6ZS49 121 aa3.96□□□□□ -1.77
CCDC39-204ENST00000476379 NEU4Q8WWR8 484 aaPredicted RBP3.96□□□□□ -1.77
CCDC39-204ENST00000476379 GTSF1LQ9H1H1 148 aa3.96□□□□□ -1.77
CCDC39-204ENST00000476379 DKK2Q9UBU2 259 aa3.96□□□□□ -1.77
CCDC39-204ENST00000476379 SIGLEC9Q9Y336 463 aa3.96□□□□□ -1.77
CCDC39-204ENST00000476379 SOX21Q9Y651 276 aaPredicted RBP3.96□□□□□ -1.77
CCDC39-204ENST00000476379 TRBV6-6A0A0A6YYG2 114 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 A0A1W2PRX2 142 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 RHOGP84095 191 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 CD300EQ496F6 205 aaPredicted RBP3.96□□□□□ -1.78
CCDC39-204ENST00000476379 A0A087WWL8 130 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 TRAV40A0A0B4J280 105 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 HAX1O00165 279 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 SMIM17P0DL12 118 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 HOXB4P17483 251 aaPredicted RBP3.96□□□□□ -1.78
CCDC39-204ENST00000476379 LOXP28300 417 aaPredicted RBP3.96□□□□□ -1.78
CCDC39-204ENST00000476379 MC5RP33032 325 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 RNASE4P34096 147 aaKnown RBP3.96□□□□□ -1.78
CCDC39-204ENST00000476379 TMEM95Q3KNT9 176 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 RNASE13Q5GAN3 156 aaKnown RBP3.96□□□□□ -1.78
CCDC39-204ENST00000476379 TMEM78Q5T7P6 136 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 GTSF1Q8WW33 167 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 COL5A1P20908 1838 aaPredicted RBP3.96□□□□□ -1.78
CCDC39-204ENST00000476379 MUC4Q99102 2169 aa3.96□□□□□ -1.78
CCDC39-204ENST00000476379 PRR20EP86478 221 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 PRR20CP86479 221 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 PRR20DP86480 221 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 PRR20BP86481 221 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 PRR20AP86496 221 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 FER1L6-AS1Q8NA97 138 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 C1RLQ9NZP8 487 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 DPM3Q9P2X0 92 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 MRPS18CQ9Y3D5 142 aaKnown RBP3.95□□□□□ -1.78
CCDC39-204ENST00000476379 SPCS1Q9Y6A9 102 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 KNCNA6PVL3 124 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 NDUFB8O95169 186 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 GAS8-AS1O95177 125 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 LIPFP07098 398 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 PAX1P15863 534 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 PSMB2P49721 201 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 LINC00310P59036 64 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 TMEM170BQ5T4T1 132 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 ZC2HC1BQ5TFG8 222 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 SPATA12Q7Z6I5 190 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 C14orf178Q8N769 122 aaPredicted RBP3.95□□□□□ -1.78
CCDC39-204ENST00000476379 ARPC1AQ92747 370 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 FXYD5Q96DB9 178 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 SMR3AQ99954 134 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 NDUFA4L2Q9NRX3 87 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 CYSLTR1Q9Y271 337 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 PHLDA3Q9Y5J5 127 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 COL27A1Q8IZC6 1860 aaPredicted RBP3.95□□□□□ -1.78
CCDC39-204ENST00000476379 SH2D1AO60880 128 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 TNFRSF6BO95407 300 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 TRGV3P03979 118 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 TEX36Q5VZQ5 186 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 TNFRSF14Q92956 283 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 SFXN3Q9BWM7 321 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 ZFP30Q9Y2G7 519 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 FAM231BA6NCW3 169 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 NBR2O15453 112 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 SFTPCP11686 197 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 APOBEC3AP31941 199 aaPredicted RBP3.95□□□□□ -1.78
CCDC39-204ENST00000476379 CEACAM3P40198 252 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 PSG9Q00887 426 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 OR1N2Q8NGR9 330 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 DUX3Q96PT4 197 aa3.95□□□□□ -1.78
CCDC39-204ENST00000476379 LINC01548A6NM66 108 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 CEACAM4O75871 244 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 NPYP01303 97 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 DLX6P56179 175 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 KRTAP27-1Q3LI81 207 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 Q8NFD4 153 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 OR2K2Q8NGT1 345 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 C1orf159Q96HA4 380 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 MRPL32Q9BYC8 188 aaKnown RBP3.94□□□□□ -1.78
CCDC39-204ENST00000476379 EXPH5Q8NEV8 1989 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 TRAV12-2A0A075B6T6 113 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 GAGE12BA1L429 117 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 CYSRT1A8MQ03 144 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 ADARB2-AS1A8MUL3 147 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 VWC2LB2RUY7 222 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 PRAC2D3DTV9 90 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 BUB1B-PAK6H3BSN5 160 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 ANKRD39Q53RE8 183 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 TMEM97Q5BJF2 176 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 Q86TA4 180 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 ORMDL3Q8N138 153 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 MYOZ3Q8TDC0 251 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 BPESC1Q9GZL8 116 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 K7ERU9 68 aa3.94□□□□□ -1.78
CCDC39-204ENST00000476379 ZNF688P0C7X2 276 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms