RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 LRRC37A5PQ49AS3 106 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 Q6ZRG5 221 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 PPP1R1CQ8WVI7 109 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 MRPL53Q96EL3 112 aaKnown RBP8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 LINC00467Q9BRT7 94 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 MED28Q9H204 178 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 TMEM14CQ9P0S9 112 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ALG5Q9Y673 324 aa8.48□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 TRBV19A0A075B6N1 114 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 KLLNB2CW77 178 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 MPDU1O75352 247 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 CCDC28AQ8IWP9 274 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 C11orf72Q8NBR9 251 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 OR1L4Q8NGR5 311 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 ASB13Q8WXK3 278 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 GNPNAT1Q96EK6 184 aaPredicted RBP8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 PFDN5Q99471 154 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 PYGO2Q9BRQ0 406 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 Q9H3A6 140 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 SLC39A9Q9NUM3 307 aa8.47□□□□□ -1.05
MSH5-SAPCD1-205ENST00000476085 DNAH5Q8TE73 4624 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 TRAV12-3A0A0B4J271 114 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 IGSF23A1L1A6 192 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 GAGE12BA1L429 117 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 M0R3E3 92 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 GAGE7O76087 117 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 MPC2O95563 127 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 SLC25A5P05141 298 aaKnown RBP8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 GAGE12FP0CL80 117 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 GAGE12GP0CL81 117 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 GAGE12IP0CL82 117 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 LEPP41159 167 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 OR5I1Q13606 314 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 VSIG2Q96IQ7 327 aa8.46□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 A0A1W2PPQ1 181 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 C16orf90A8MZG2 172 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 SNURFLB1AK76 121 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 HIST1H1EP10412 219 aaKnown RBP8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 CRISP2P16562 243 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 BTF3P20290 206 aaKnown RBP8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 PDE6HQ13956 83 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 CLINT1Q14677 625 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 ANXA2RQ3ZCQ2 193 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 C9orf47Q6ZRZ4 202 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 Q6ZTI0 123 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 LINC00477Q96M19 166 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 AGPAT4-IT1Q9H0P7 198 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 OR5AC2Q9NZP5 309 aa8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 MRPS16Q9Y3D3 137 aaKnown RBP8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 APOBP04114 4563 aaKnown RBP8.45□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 A0A0J9YY99 117 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 UBE2L5PA0A1B0GUS4 154 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 NMBP08949 121 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 CD300CQ08708 224 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 ERCC8Q13216 396 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 OR5C1Q8NGR4 320 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 THAP6Q8TBB0 222 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 FAM167A-AS1Q96KT0 104 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 TMPRSS5Q9H3S3 457 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 KCNIP2Q9NS61 270 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 PRELID1Q9Y255 219 aa8.44□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 A0A096LPF7 62 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 C7orf71A4D174 169 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 H0YIZ8 118 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 J3KRW8 73 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 SPINK4O60575 86 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 FGF7P21781 194 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 RPL12P30050 165 aaKnown RBP8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 NHLH2Q02577 135 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 GCSAMLQ5JQS6 135 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 ZFAND2AQ8N6M9 145 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 GSN-AS1Q9NRJ2 163 aa8.43□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 C17orf112F2Z3M2 114 aa8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 PYYP10082 97 aa8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 KRTAP10-2P60368 255 aa8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 TTC32Q5I0X7 151 aa8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 Q6ZRN7 208 aaPredicted RBP8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 EXOC3-AS1Q8N2X6 119 aa8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 EIF4E3Q8N5X7 224 aaKnown RBP8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 ZNF680Q8NEM1 530 aa8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 SLC25A2Q9BXI2 301 aa8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 NPCDR1Q9BY65 106 aa8.42□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 IFNA5P01569 189 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 GIPP09681 153 aaPredicted RBP8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 TCL1AP56279 114 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 BTN1A1Q13410 526 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 IBA57Q5T440 356 aaKnown RBP8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 PRR9Q5T870 116 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 Q6ZQT7 251 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 SPATA12Q7Z6I5 190 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 ATP5SQ99766 215 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 VGLL1Q99990 258 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 ZNF492Q9P255 531 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 MBD2Q9UBB5 411 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 KLF12Q9Y4X4 402 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 HSPB11Q9Y547 144 aa8.41□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 TRBV7-9A0A0J9YWB2 115 aa8.4□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 NBEAP1P0C6P0 100 aa8.4□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 RNASE4P34096 147 aaKnown RBP8.4□□□□□ -1.06
MSH5-SAPCD1-205ENST00000476085 Q8N1X5 172 aa8.4□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms