RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 AKR1C3P42330 323 aa3□□□□□ -1.93
USP4-209ENST00000475873 UCP3P55916 312 aa3□□□□□ -1.93
USP4-209ENST00000475873 YPEL3P61236 119 aaPredicted RBP3□□□□□ -1.93
USP4-209ENST00000475873 ZNF415Q09FC8 603 aa3□□□□□ -1.93
USP4-209ENST00000475873 MLLT11Q13015 90 aaPredicted RBP3□□□□□ -1.93
USP4-209ENST00000475873 MSMO1Q15800 293 aa3□□□□□ -1.93
USP4-209ENST00000475873 NEDD8Q15843 81 aa3□□□□□ -1.93
USP4-209ENST00000475873 IBA57Q5T440 356 aaKnown RBP3□□□□□ -1.93
USP4-209ENST00000475873 UQCC3Q6UW78 93 aa3□□□□□ -1.93
USP4-209ENST00000475873 AMIGO2Q86SJ2 522 aa3□□□□□ -1.93
USP4-209ENST00000475873 C11orf72Q8NBR9 251 aa3□□□□□ -1.93
USP4-209ENST00000475873 INO80EQ8NBZ0 244 aaPredicted RBP3□□□□□ -1.93
USP4-209ENST00000475873 BPIFB6Q8NFQ5 453 aa3□□□□□ -1.93
USP4-209ENST00000475873 OR51G1Q8NGK1 321 aa3□□□□□ -1.93
USP4-209ENST00000475873 OR52E5Q8NH55 327 aa3□□□□□ -1.93
USP4-209ENST00000475873 RNASEH2CQ8TDP1 164 aaKnown RBP3□□□□□ -1.93
USP4-209ENST00000475873 BLNKQ8WV28 456 aa3□□□□□ -1.93
USP4-209ENST00000475873 C16orf92Q96LL3 132 aa3□□□□□ -1.93
USP4-209ENST00000475873 FGF20Q9NP95 211 aaPredicted RBP3□□□□□ -1.93
USP4-209ENST00000475873 RPRMQ9NS64 109 aa3□□□□□ -1.93
USP4-209ENST00000475873 CTNNBIP1Q9NSA3 81 aaPredicted RBP3□□□□□ -1.93
USP4-209ENST00000475873 PRO0255Q9UI72 69 aa3□□□□□ -1.93
USP4-209ENST00000475873 PRNDQ9UKY0 176 aa3□□□□□ -1.93
USP4-209ENST00000475873 FUT9Q9Y231 359 aa3□□□□□ -1.93
USP4-209ENST00000475873 HSPB11Q9Y547 144 aa3□□□□□ -1.93
USP4-209ENST00000475873 TRGV2A0A075B6R0 118 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 A0A0D9SG52 128 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 LOC100131303A0A0U1RQF7 123 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 TMEM272A0A1B0GTI8 110 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 E5RGE8 158 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 H7BYZ3 331 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 K7ERU9 68 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 SLC17A2O00624 439 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 GYG2O15488 501 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 SNAPC5O75971 98 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 IGKV1-39P01597 117 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 IGKV1D-39P04432 117 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 GIPP09681 153 aaPredicted RBP2.99□□□□□ -1.93
USP4-209ENST00000475873 OR5AC1P0C628 307 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 PVALBP20472 110 aaPredicted RBP2.99□□□□□ -1.93
USP4-209ENST00000475873 OR10J1P30954 320 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 TNFSF8P32971 234 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 LPAR6P43657 344 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 RAB5CP51148 216 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 RND2P52198 227 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 RAP2BP61225 183 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 SELENOTP62341 195 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 RPL32P62910 135 aaKnown RBP2.99□□□□□ -1.93
USP4-209ENST00000475873 ID3Q02535 119 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 ST3GAL4Q11206 333 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 CIRBPQ14011 172 aaKnown RBP2.99□□□□□ -1.93
USP4-209ENST00000475873 LAGE3Q14657 143 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 TDRG1Q3Y452 100 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 GFI1BQ5VTD9 330 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 PRSS54Q6PEW0 395 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 IZUMO2Q6UXV1 221 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 ZNF738Q8NE65 137 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 OR10R2Q8NGX6 335 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 TERB2Q8NHR7 220 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 RHOXF1Q8NHV9 184 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 NUDCD2Q8WVJ2 157 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 S100ZQ8WXG8 99 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 ST6GAL2Q96JF0 529 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 SDHCQ99643 169 aaPredicted RBP2.99□□□□□ -1.93
USP4-209ENST00000475873 SLC25A32Q9H2D1 315 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 MIXL1Q9H2W2 232 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 WFDC1Q9HC57 220 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 HSPB7Q9UBY9 170 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 VAX2Q9UIW0 290 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 SCP2D1Q9UJQ7 156 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 OAZ3Q9UMX2 235 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 GPR132Q9UNW8 380 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 V9GYY9 64 aa2.99□□□□□ -1.93
USP4-209ENST00000475873 TRGV1A0A0A0MS02 117 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 C20orf202A1L168 122 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 SNURFLB1AK76 121 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 C9JCJ5 164 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 M0R143 59 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 GPR31O00270 319 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 GSTZ1O43708 216 aaPredicted RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 HSBP1O75506 76 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 SCGNO76038 276 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 DUSP14O95147 198 aaKnown RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 TOMM40O96008 361 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 PPYP01298 95 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 PSG1P11464 419 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 AKR1C4P17516 323 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 RAB3BP20337 219 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 PSMA1P25786 263 aaKnown RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 SRIP30626 198 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 OPRK1P41145 380 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 CAV2P51636 162 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 CKS1BP61024 79 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 ERVK-16P61578 105 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 HSPE1P61604 102 aaKnown RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 RRAS2P62070 204 aaPredicted RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 PRR3P79522 188 aaKnown RBP2.98□□□□□ -1.93
USP4-209ENST00000475873 CATR1Q13166 79 aa2.98□□□□□ -1.93
USP4-209ENST00000475873 SRSF9Q13242 221 aaKnown RBP eCLIP2.98□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms