RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 HBG2P69892 147 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 STX12Q86Y82 276 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 KCNRGQ8N5I3 272 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 PFDN5Q99471 154 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 NPCDR1Q9BY65 106 aa9.91□□□□□ -0.82
UPF3A-204ENST00000475218 PYYP10082 97 aa9.9□□□□□ -0.82
UPF3A-204ENST00000475218 HTN1P15515 57 aa9.9□□□□□ -0.82
UPF3A-204ENST00000475218 GUK1Q16774 197 aa9.9□□□□□ -0.82
UPF3A-204ENST00000475218 ATP6V1FQ16864 119 aa9.9□□□□□ -0.82
UPF3A-204ENST00000475218 LGALS9BQ3B8N2 356 aa9.9□□□□□ -0.82
UPF3A-204ENST00000475218 THAP6Q8TBB0 222 aa9.9□□□□□ -0.82
UPF3A-204ENST00000475218 FAM167A-AS1Q96KT0 104 aa9.9□□□□□ -0.82
UPF3A-204ENST00000475218 ARPC5LQ9BPX5 153 aa9.9□□□□□ -0.82
UPF3A-204ENST00000475218 TMEM14CQ9P0S9 112 aa9.9□□□□□ -0.82
UPF3A-204ENST00000475218 PCLOQ9Y6V0 5065 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 IGLV2-18A0A075B6J9 118 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 ZNF253O75346 499 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 BTN1A1Q13410 526 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.89□□□□□ -0.83
UPF3A-204ENST00000475218 OR5C1Q8NGR4 320 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 OR10J6PQ8NGY7 276 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 C16orf74Q96GX8 76 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 SLC25A2Q9BXI2 301 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 NMES1Q9C002 83 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 PPP1R14DQ9NXH3 145 aa9.89□□□□□ -0.83
UPF3A-204ENST00000475218 KANTRA0A1W2PQU2 76 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 RAB19A4D1S5 217 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 H7BYZ3 331 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 RNF212Q495C1 297 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 LRRC37A5PQ49AS3 106 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 ALKAL2Q6UX46 152 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 LINC00612Q8N6U2 182 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 TMEM263Q8WUH6 116 aaKnown RBP9.88□□□□□ -0.83
UPF3A-204ENST00000475218 ODF3Q96PU9 254 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 C20orf144Q9BQM9 153 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 NOP10Q9NPE3 64 aaKnown RBP9.88□□□□□ -0.83
UPF3A-204ENST00000475218 CBY3A6NI87 242 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 BCL2L11O43521 198 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 MPDU1O75352 247 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 FLI1Q01543 452 aaPredicted RBP9.88□□□□□ -0.83
UPF3A-204ENST00000475218 ERCC8Q13216 396 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 LINC00336Q6ZUF6 198 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 MIR17HGQ75NE6 70 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 MRPL53Q96EL3 112 aaKnown RBP9.88□□□□□ -0.83
UPF3A-204ENST00000475218 FAM19A4Q96LR4 140 aa9.88□□□□□ -0.83
UPF3A-204ENST00000475218 TIMM8BQ9Y5J9 83 aaPredicted RBP9.88□□□□□ -0.83
UPF3A-204ENST00000475218 E5RGE8 158 aa9.87□□□□□ -0.83
UPF3A-204ENST00000475218 J3KRW8 73 aa9.87□□□□□ -0.83
UPF3A-204ENST00000475218 HIST1H1EP10412 219 aaKnown RBP9.87□□□□□ -0.83
UPF3A-204ENST00000475218 ZNF493Q6ZR52 646 aa9.87□□□□□ -0.83
UPF3A-204ENST00000475218 EXOC3-AS1Q8N2X6 119 aa9.87□□□□□ -0.83
UPF3A-204ENST00000475218 DNAH11Q96DT5 4516 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 F5H768 121 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 CLINT1Q14677 625 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 UBE2DNLQ8IWF7 75 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 C15orf53Q8NAA6 179 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 CLRN3Q8NCR9 226 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 PCNPQ8WW12 178 aaKnown RBP9.86□□□□□ -0.83
UPF3A-204ENST00000475218 WDR61Q9GZS3 305 aaKnown RBP9.86□□□□□ -0.83
UPF3A-204ENST00000475218 TNFSF18Q9UNG2 199 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 TRAV12-3A0A0B4J271 114 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 ATP5G1P05496 136 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 ATP5G3P48201 142 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 CYCSP99999 105 aaKnown RBP9.86□□□□□ -0.83
UPF3A-204ENST00000475218 PPP1R1CQ8WVI7 109 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 KRTAP17-1Q9BYP8 105 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 AGPAT4-IT1Q9H0P7 198 aa9.86□□□□□ -0.83
UPF3A-204ENST00000475218 KLLNB2CW77 178 aa9.85□□□□□ -0.83
UPF3A-204ENST00000475218 PDE6HQ13956 83 aa9.85□□□□□ -0.83
UPF3A-204ENST00000475218 Q6ZQT7 251 aa9.85□□□□□ -0.83
UPF3A-204ENST00000475218 BLNKQ8WV28 456 aa9.85□□□□□ -0.83
UPF3A-204ENST00000475218 RNF141Q8WVD5 230 aa9.85□□□□□ -0.83
UPF3A-204ENST00000475218 FXYD5Q96DB9 178 aa9.85□□□□□ -0.83
UPF3A-204ENST00000475218 ZNF503Q96F45 646 aa9.85□□□□□ -0.83
UPF3A-204ENST00000475218 SLC25A31Q9H0C2 315 aa9.85□□□□□ -0.83
UPF3A-204ENST00000475218 RNF222A6NCQ9 220 aa9.84□□□□□ -0.83
UPF3A-204ENST00000475218 PRSS29PA6NIE9 313 aa9.84□□□□□ -0.83
UPF3A-204ENST00000475218 ZNF324O75467 553 aaPredicted RBP9.84□□□□□ -0.83
UPF3A-204ENST00000475218 H2AFB1P0C5Y9 115 aa9.84□□□□□ -0.83
UPF3A-204ENST00000475218 HOXA5P20719 270 aa9.84□□□□□ -0.83
UPF3A-204ENST00000475218 LEPP41159 167 aa9.84□□□□□ -0.83
UPF3A-204ENST00000475218 PRR9Q5T870 116 aa9.84□□□□□ -0.83
UPF3A-204ENST00000475218 INO80EQ8NBZ0 244 aaPredicted RBP9.84□□□□□ -0.83
UPF3A-204ENST00000475218 ZNRF2Q8NHG8 242 aa9.84□□□□□ -0.83
UPF3A-204ENST00000475218 STOML3Q8TAV4 291 aa9.84□□□□□ -0.83
UPF3A-204ENST00000475218 IGKV2-40A0A087WW87 121 aaPredicted RBP9.83□□□□□ -0.84
UPF3A-204ENST00000475218 IGKV2D-40P01614 121 aaPredicted RBP9.83□□□□□ -0.84
UPF3A-204ENST00000475218 RLN2P04090 185 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 ICAM4Q14773 271 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 C11orf72Q8NBR9 251 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 TIMM9Q9Y5J7 89 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 APOC3P02656 99 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 C9orf47Q6ZRZ4 202 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 SVBPQ8N300 66 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 ZFAND2AQ8N6M9 145 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 VGLL1Q99990 258 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 PYGO2Q9BRQ0 406 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 LINC00588Q9Y4M8 146 aa9.83□□□□□ -0.84
UPF3A-204ENST00000475218 GAGE12BA1L429 117 aa9.82□□□□□ -0.84
UPF3A-204ENST00000475218 C7orf71A4D174 169 aa9.82□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms