RNA–Protein interactions for RNA: ENST00000473405.1

CCDC88B-206, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best)

Gene CCDC88B, Length 783 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-206ENST00000473405 SLC25A2Q9BXI2 301 aa13.07□□□□□ -0.32
CCDC88B-206ENST00000473405 C7orf71A4D174 169 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 SLC25A5P05141 298 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 TNP2Q05952 138 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 DAZ2Q13117 558 aaKnown RBP13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 OR5I1Q13606 314 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 Q6ZTI0 123 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 C11orf72Q8NBR9 251 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 OR5C1Q8NGR4 320 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 GNPNAT1Q96EK6 184 aaPredicted RBP13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 FAM167A-AS1Q96KT0 104 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 TMPRSS5Q9H3S3 457 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 OR5AC2Q9NZP5 309 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 PRELID1Q9Y255 219 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 TIMM9Q9Y5J7 89 aa13.06□□□□□ -0.32
CCDC88B-206ENST00000473405 A0A0J9YY99 117 aa13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 ZNF324O75467 553 aaPredicted RBP13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 CD300CQ08708 224 aa13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 BTN1A1Q13410 526 aa13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 CLINT1Q14677 625 aa13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 C6orf223Q8N319 242 aa13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 RXFP4Q8TDU9 374 aa13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 BLNKQ8WV28 456 aa13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 ZNF503Q96F45 646 aa13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 AGPAT4-IT1Q9H0P7 198 aa13.05□□□□□ -0.32
CCDC88B-206ENST00000473405 H0YIZ8 118 aa13.04□□□□□ -0.32
CCDC88B-206ENST00000473405 MIR17HGQ75NE6 70 aa13.04□□□□□ -0.32
CCDC88B-206ENST00000473405 ENKURQ8TC29 256 aa13.04□□□□□ -0.32
CCDC88B-206ENST00000473405 LINC00477Q96M19 166 aa13.04□□□□□ -0.32
CCDC88B-206ENST00000473405 KRTAP1-5Q9BYS1 174 aa13.04□□□□□ -0.32
CCDC88B-206ENST00000473405 NMES1Q9C002 83 aa13.04□□□□□ -0.32
CCDC88B-206ENST00000473405 IGKV2-40A0A087WW87 121 aaPredicted RBP13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 E5RGE8 158 aa13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 H3BNG1 76 aa13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 IGKV2D-40P01614 121 aaPredicted RBP13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 CRISP2P16562 243 aa13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 ICAM4Q14773 271 aa13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 LRRC37A5PQ49AS3 106 aa13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 C9orf47Q6ZRZ4 202 aa13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 ZNF680Q8NEM1 530 aa13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 LINC00467Q9BRT7 94 aa13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 GSN-AS1Q9NRJ2 163 aa13.03□□□□□ -0.32
CCDC88B-206ENST00000473405 H2BFSP57053 126 aa13.02□□□□□ -0.33
CCDC88B-206ENST00000473405 PRR9Q5T870 116 aa13.02□□□□□ -0.33
CCDC88B-206ENST00000473405 FAM122CQ6P4D5 195 aa13.02□□□□□ -0.33
CCDC88B-206ENST00000473405 ZFAND2AQ8N6M9 145 aa13.02□□□□□ -0.33
CCDC88B-206ENST00000473405 FXYD5Q96DB9 178 aa13.02□□□□□ -0.33
CCDC88B-206ENST00000473405 SLC25A31Q9H0C2 315 aa13.02□□□□□ -0.33
CCDC88B-206ENST00000473405 AAMDCQ9H7C9 122 aa13.02□□□□□ -0.33
CCDC88B-206ENST00000473405 RNASE4P34096 147 aaKnown RBP13.01□□□□□ -0.33
CCDC88B-206ENST00000473405 ANXA2RQ3ZCQ2 193 aa13.01□□□□□ -0.33
CCDC88B-206ENST00000473405 Q6ZQT7 251 aa13.01□□□□□ -0.33
CCDC88B-206ENST00000473405 C18orf15Q96N68 181 aa13.01□□□□□ -0.33
CCDC88B-206ENST00000473405 VGLL1Q99990 258 aa13.01□□□□□ -0.33
CCDC88B-206ENST00000473405 WDR61Q9GZS3 305 aaKnown RBP13.01□□□□□ -0.33
CCDC88B-206ENST00000473405 Q9H8V8 135 aa13.01□□□□□ -0.33
CCDC88B-206ENST00000473405 OR10J4P0C629 311 aa13□□□□□ -0.33
CCDC88B-206ENST00000473405 NBEAP1P0C6P0 100 aa13□□□□□ -0.33
CCDC88B-206ENST00000473405 ESRGQ1W209 222 aa13□□□□□ -0.33
CCDC88B-206ENST00000473405 EIF4E3Q8N5X7 224 aaKnown RBP13□□□□□ -0.33
CCDC88B-206ENST00000473405 PHYHIPLQ96FC7 376 aa13□□□□□ -0.33
CCDC88B-206ENST00000473405 VSIG2Q96IQ7 327 aa13□□□□□ -0.33
CCDC88B-206ENST00000473405 UPK3BQ9BT76 320 aa13□□□□□ -0.33
CCDC88B-206ENST00000473405 MRPL32Q9BYC8 188 aaKnown RBP13□□□□□ -0.33
CCDC88B-206ENST00000473405 OR51M1Q9H341 326 aa13□□□□□ -0.33
CCDC88B-206ENST00000473405 PRAF2O60831 178 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 GPX1P07203 203 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 NMBP08949 121 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 TCL1AP56279 114 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 Q9H3A6 140 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 KCNIP2Q9NS61 270 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 TP53TG3Q9ULZ0 132 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 FUT9Q9Y231 359 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 KLF12Q9Y4X4 402 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 APOBP04114 4563 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 DNAH5Q8TE73 4624 aa12.99□□□□□ -0.33
CCDC88B-206ENST00000473405 TRGV2A0A075B6R0 118 aa12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 TRGV1A0A0A0MS02 117 aa12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 INMT-MINDY4F8WBC2 141 aa12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 SPINK4O60575 86 aa12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 CYCSP99999 105 aaKnown RBP12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 TMEM78Q5T7P6 136 aa12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 Q8TAT8 98 aa12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 PPP1R1CQ8WVI7 109 aa12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 PAXXQ9BUH6 204 aa12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 ZNF492Q9P255 531 aa12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 MRPS16Q9Y3D3 137 aaKnown RBP12.98□□□□□ -0.33
CCDC88B-206ENST00000473405 A0A096LPF7 62 aa12.97□□□□□ -0.33
CCDC88B-206ENST00000473405 IBA57Q5T440 356 aaKnown RBP12.97□□□□□ -0.33
CCDC88B-206ENST00000473405 ATP5SQ99766 215 aa12.97□□□□□ -0.33
CCDC88B-206ENST00000473405 MARVELD1Q9BSK0 173 aa12.97□□□□□ -0.33
CCDC88B-206ENST00000473405 TTC32Q5I0X7 151 aa12.96□□□□□ -0.33
CCDC88B-206ENST00000473405 IGHV1OR15-1A0A075B7D0 117 aa12.95□□□□□ -0.34
CCDC88B-206ENST00000473405 TRBV7-9A0A0J9YWB2 115 aa12.95□□□□□ -0.34
CCDC88B-206ENST00000473405 C16orf90A8MZG2 172 aa12.95□□□□□ -0.34
CCDC88B-206ENST00000473405 C17orf112F2Z3M2 114 aa12.95□□□□□ -0.34
CCDC88B-206ENST00000473405 RGS13O14921 159 aa12.95□□□□□ -0.34
CCDC88B-206ENST00000473405 OR7C2O60412 319 aa12.95□□□□□ -0.34
CCDC88B-206ENST00000473405 ZNF138P52744 262 aa12.95□□□□□ -0.34
CCDC88B-206ENST00000473405 MPC2O95563 127 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms