RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 TRAV40A0A0B4J280 105 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 SVIPQ8NHG7 77 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 CDKN1AP38936 164 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 LYPD6BQ8NI32 183 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 IGHV1-3A0A0C4DH29 117 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 C20orf204Q6ZNR8 217 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 NTF4P34130 210 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 HERV-K104P63124 156 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 FOXF2Q12947 444 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 TIMM23O14925 209 aa10.83□□□□□ -0.68
COL6A3-209ENST00000472056 NTN3O00634 580 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-209ENST00000472056 SPANXB1Q9NS25 103 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-209ENST00000472056 TRBV25-1A0A075B6N4 114 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 CHKB-CPT1BH3BT56 60 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 IGHV3-23P01764 117 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 NPSP0C0P6 89 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 RFPL3SP0C7P2 107 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 HS3ST6Q96QI5 342 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 HAMPP81172 84 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 C2orf66Q6UXQ4 117 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 DEFB125Q8N687 156 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 KLRD1Q13241 179 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 Q6ZWC4 215 aa10.82□□□□□ -0.68
COL6A3-209ENST00000472056 C14orf178Q8N769 122 aaPredicted RBP10.82□□□□□ -0.68
COL6A3-209ENST00000472056 UBE2DNLQ8IWF7 75 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 RNF152Q8N8N0 203 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 KLF2Q9Y5W3 355 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-209ENST00000472056 BUB1B-PAK6H3BSN5 160 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 ZNF474Q6S9Z5 364 aaPredicted RBP10.81□□□□□ -0.68
COL6A3-209ENST00000472056 NKAPP1Q8N9T2 125 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 V9GYV3 84 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 RBAKDNA6NC62 111 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 TP53TG1Q9Y2A0 90 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 E9PLN8 166 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 RNASE2P10153 161 aaKnown RBP10.81□□□□□ -0.68
COL6A3-209ENST00000472056 VMO1Q7Z5L0 202 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 TEN1Q86WV5 123 aa10.81□□□□□ -0.68
COL6A3-209ENST00000472056 H3BMG7 143 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 TCF15Q12870 199 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 C1orf159Q96HA4 380 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 A0A1W2PR77 199 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 NBL1P41271 181 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 IGKV1D-8A0A087WSZ0 117 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 THBDP07204 575 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 H0YGX0 51 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 PDE6GP18545 87 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 HIGD1BQ9P298 99 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 IGHG2P01859 326 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 DMRTC2Q8IXT2 367 aaPredicted RBP10.8□□□□□ -0.68
COL6A3-209ENST00000472056 PNRC2Q9NPJ4 139 aaKnown RBP10.8□□□□□ -0.68
COL6A3-209ENST00000472056 IGHV1-69DA0A0B4J2H0 117 aa10.8□□□□□ -0.68
COL6A3-209ENST00000472056 CARD19Q96LW7 228 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 TRGV1A0A0A0MS02 117 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 A0A1W2PPI3 338 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 TMEM178BH3BS89 294 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 PTPRSQ13332 1948 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 KNCNA6PVL3 124 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 Q6P435 159 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 FOXI2Q6ZQN5 318 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 PRDM6Q9NQX0 595 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 RNF166Q96A37 237 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-209ENST00000472056 CELA3BP08861 270 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 SEC61GP60059 68 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 SMIM2Q9BVW6 85 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 CPAMD8Q8IZJ3 1885 aa10.79□□□□□ -0.68
COL6A3-209ENST00000472056 RPL15P61313 204 aaKnown RBP10.79□□□□□ -0.68
COL6A3-209ENST00000472056 TRAV13-1A0A0B4J241 112 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 MST1LQ2TV78 715 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 LMO1P25800 156 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 TMEM200BQ69YZ2 307 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 RMI2Q96E14 147 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 F6UB75 175 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 IGLL1P15814 213 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 THAP8Q8NA92 274 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 ORMDL1Q9P0S3 153 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 FUSP35637 526 aaKnown RBP eCLIP10.78□□□□□ -0.68
COL6A3-209ENST00000472056 ARMS2P0C7Q2 107 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 ADAMTS20P59510 1910 aa10.78□□□□□ -0.68
COL6A3-209ENST00000472056 NAA38Q9BRA0 125 aaKnown RBP10.78□□□□□ -0.68
COL6A3-209ENST00000472056 E9PQ18 207 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 J3QQQ9 107 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 GATA4P43694 442 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 SYNJ2BPP57105 145 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 ZNF561-AS1K7EIQ3 104 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 NDUFA4L2Q9NRX3 87 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 MP68P56378 58 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 IGKV1-27A0A075B6S5 117 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 IGKV1-12A0A0C4DH73 117 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 IGKV1D-12P01611 117 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 BMPERQ8N8U9 685 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 MRPL53Q96EL3 112 aaKnown RBP10.77□□□□□ -0.69
COL6A3-209ENST00000472056 NDUFA12Q9UI09 145 aa10.77□□□□□ -0.69
COL6A3-209ENST00000472056 DOPEY1Q5JWR5 2465 aa10.76□□□□□ -0.69
COL6A3-209ENST00000472056 NDUFS5O43920 106 aa10.76□□□□□ -0.69
COL6A3-209ENST00000472056 PPIFP30405 207 aaKnown RBP10.76□□□□□ -0.69
COL6A3-209ENST00000472056 FOXL2NBQ6ZUU3 175 aa10.76□□□□□ -0.69
COL6A3-209ENST00000472056 IGHV1-46P01743 117 aa10.76□□□□□ -0.69
COL6A3-209ENST00000472056 MRPL51Q4U2R6 128 aaKnown RBP10.76□□□□□ -0.69
COL6A3-209ENST00000472056 TRBV19A0A075B6N1 114 aa10.76□□□□□ -0.69
COL6A3-209ENST00000472056 IGHV1-18A0A0C4DH31 117 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms