RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 SYS1-DBNDD2H3BUS1 97 aa14.73□□□□□ -0.05
VIM-203ENST00000469543 ZNF25P17030 456 aaPredicted RBP14.73□□□□□ -0.05
VIM-203ENST00000469543 IFI27P40305 119 aaPredicted RBP14.73□□□□□ -0.05
VIM-203ENST00000469543 GAS8-AS1O95177 125 aa14.73□□□□□ -0.05
VIM-203ENST00000469543 IGHV4-38-2P0DP08 117 aa14.73□□□□□ -0.05
VIM-203ENST00000469543 Q6ZVH6 145 aa14.73□□□□□ -0.05
VIM-203ENST00000469543 OR4C46A6NHA9 309 aa14.72□□□□□ -0.05
VIM-203ENST00000469543 ORM1P02763 201 aa14.72□□□□□ -0.05
VIM-203ENST00000469543 LCNL1Q6ZST4 164 aa14.72□□□□□ -0.05
VIM-203ENST00000469543 UQCR10Q9UDW1 63 aa14.72□□□□□ -0.05
VIM-203ENST00000469543 TRBV12-3P01733 135 aa14.72□□□□□ -0.05
VIM-203ENST00000469543 STPG4Q8N801 248 aa14.72□□□□□ -0.05
VIM-203ENST00000469543 CHCHD1Q96BP2 118 aaKnown RBP14.72□□□□□ -0.05
VIM-203ENST00000469543 TRAV9-2A0A087WT02 112 aa14.71□□□□□ -0.05
VIM-203ENST00000469543 Q6ZS46 218 aa14.71□□□□□ -0.05
VIM-203ENST00000469543 IL17RELQ6ZVW7 336 aa14.71□□□□□ -0.05
VIM-203ENST00000469543 PTPN13Q12923 2485 aa14.71□□□□□ -0.05
VIM-203ENST00000469543 TWIST1Q15672 202 aa14.71□□□□□ -0.05
VIM-203ENST00000469543 S100A7AQ86SG5 101 aa14.71□□□□□ -0.05
VIM-203ENST00000469543 NCR2O95944 276 aa14.7□□□□□ -0.06
VIM-203ENST00000469543 HNRNPA3P51991 378 aaKnown RBP14.7□□□□□ -0.06
VIM-203ENST00000469543 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.7□□□□□ -0.06
VIM-203ENST00000469543 PRSS3P2Q8NHM4 247 aa14.7□□□□□ -0.06
VIM-203ENST00000469543 HINT1P49773 126 aaPredicted RBP14.7□□□□□ -0.06
VIM-203ENST00000469543 DEFB1P60022 68 aa14.7□□□□□ -0.06
VIM-203ENST00000469543 ANKRD17O75179 2603 aaKnown RBP14.7□□□□□ -0.06
VIM-203ENST00000469543 RPLP1P05386 114 aaKnown RBP14.69□□□□□ -0.06
VIM-203ENST00000469543 TSPOP30536 169 aa14.69□□□□□ -0.06
VIM-203ENST00000469543 SAPCD1Q5SSQ6 148 aa14.69□□□□□ -0.06
VIM-203ENST00000469543 AP5S1Q9NUS5 200 aa14.69□□□□□ -0.06
VIM-203ENST00000469543 GOSR1O95249 250 aa14.69□□□□□ -0.06
VIM-203ENST00000469543 CRXO43186 299 aaPredicted RBP14.68□□□□□ -0.06
VIM-203ENST00000469543 TCTAP57738 103 aa14.68□□□□□ -0.06
VIM-203ENST00000469543 PAX8Q06710 450 aa14.68□□□□□ -0.06
VIM-203ENST00000469543 LAMTOR2Q9Y2Q5 125 aa14.68□□□□□ -0.06
VIM-203ENST00000469543 USP24Q9UPU5 2620 aa14.68□□□□□ -0.06
VIM-203ENST00000469543 IGHV4-30-2A0A087WSY4 118 aa14.68□□□□□ -0.06
VIM-203ENST00000469543 IGHV3-11P01762 117 aa14.68□□□□□ -0.06
VIM-203ENST00000469543 BLCAPP62952 87 aa14.68□□□□□ -0.06
VIM-203ENST00000469543 CYB5R2Q6BCY4 276 aa14.68□□□□□ -0.06
VIM-203ENST00000469543 UNQ9165/PRO28630Q6UXU0 137 aa14.68□□□□□ -0.06
VIM-203ENST00000469543 CREBBPQ92793 2442 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 TRAV8-2A0A0B4J237 113 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 MRPL51Q4U2R6 128 aaKnown RBP14.67□□□□□ -0.06
VIM-203ENST00000469543 TMEM208Q9BTX3 173 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 AGPAT4-IT1Q9H0P7 198 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 C11orf21Q9P2W6 132 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 A0A096LNJ9 63 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 TRAV41A0A0B4J266 112 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 J3KRW8 73 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 SFTPCP11686 197 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 FAM104BQ5XKR9 115 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 KLHDC1Q8N7A1 406 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 FER1L6-AS1Q8NA97 138 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 CCL19Q99731 98 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 SIGLEC8Q9NYZ4 499 aa14.67□□□□□ -0.06
VIM-203ENST00000469543 IGHV1-69DA0A0B4J2H0 117 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 M0QZK8 103 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 IGHV1-69P01742 117 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 KLK15Q9H2R5 256 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 SCGB2A1O75556 95 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 IGF1P05019 195 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 ZNF493Q6ZR52 646 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 WFDC3Q8IUB2 231 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 EEF1AKMT3Q96AZ1 226 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 PRELID3AQ96N28 172 aa14.66□□□□□ -0.06
VIM-203ENST00000469543 TLN2Q9Y4G6 2542 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 IGKV3-7A0A075B6H7 116 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 SPRY2O43597 315 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 TRGV3P03979 118 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 OR5AL1P0C617 328 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 ATP5G2Q06055 141 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 FOXE3Q13461 319 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 NPSP0C0P6 89 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 PRSS57Q6UWY2 283 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 FA2HQ7L5A8 372 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 PSMG3-AS1Q96PY0 264 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 MAP1LC3CQ9BXW4 147 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 TEX15Q9BXT5 2789 aa14.65□□□□□ -0.06
VIM-203ENST00000469543 SNAI2O43623 268 aa14.64□□□□□ -0.07
VIM-203ENST00000469543 AVPP01185 164 aa14.64□□□□□ -0.07
VIM-203ENST00000469543 NPYP01303 97 aa14.64□□□□□ -0.07
VIM-203ENST00000469543 ATP5J2P56134 94 aa14.64□□□□□ -0.07
VIM-203ENST00000469543 C8orf86Q6ZUL3 223 aa14.64□□□□□ -0.07
VIM-203ENST00000469543 EPG5Q9HCE0 2579 aa14.64□□□□□ -0.07
VIM-203ENST00000469543 GATA1P15976 413 aaPredicted RBP14.64□□□□□ -0.07
VIM-203ENST00000469543 Q6AWC8 147 aa14.64□□□□□ -0.07
VIM-203ENST00000469543 ZNF469Q96JG9 3925 aaPredicted RBP14.63□□□□□ -0.07
VIM-203ENST00000469543 SORL1Q92673 2214 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 IGKV3D-20A0A0C4DH25 116 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 H3BUX3 64 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 SMAD7O15105 426 aaKnown RBP14.63□□□□□ -0.07
VIM-203ENST00000469543 IGLC6P0CF74 106 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 OR8A1Q8NGG7 326 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 METTL26Q96S19 204 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 ZNF747Q9BV97 191 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 FABP5P3A8MUU1 101 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 CKS2P33552 79 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 COX8CQ7Z4L0 72 aa14.63□□□□□ -0.07
VIM-203ENST00000469543 MOB4Q9Y3A3 225 aa14.63□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 80.2 ms