RNA–Protein interactions for RNA: ENST00000466222.6

CAPN3-209, Transcript of calpain 3, humanhuman

TSL 2

Gene CAPN3, Length 1,934 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-209ENST00000466222 Q9H3A6 140 aa14.34□□□□□ -0.11
CAPN3-209ENST00000466222 SETD2Q9BYW2 2564 aaPredicted RBP14.34□□□□□ -0.11
CAPN3-209ENST00000466222 IGHV3OR16-8A0A075B7F1 116 aa14.33□□□□□ -0.11
CAPN3-209ENST00000466222 FAM223BA6NKX1 122 aa14.33□□□□□ -0.11
CAPN3-209ENST00000466222 HIGD1CA8MV81 97 aa14.33□□□□□ -0.11
CAPN3-209ENST00000466222 FAM223AQ8IWN6 122 aa14.33□□□□□ -0.11
CAPN3-209ENST00000466222 BORCS7Q96B45 105 aa14.33□□□□□ -0.11
CAPN3-209ENST00000466222 PAM16Q9Y3D7 125 aa14.33□□□□□ -0.11
CAPN3-209ENST00000466222 C19orf71A6NCJ1 209 aa14.33□□□□□ -0.12
CAPN3-209ENST00000466222 TCAPO15273 167 aa14.33□□□□□ -0.12
CAPN3-209ENST00000466222 NIT1Q86X76 327 aa14.33□□□□□ -0.12
CAPN3-209ENST00000466222 EEF1AKMT3Q96AZ1 226 aa14.33□□□□□ -0.12
CAPN3-209ENST00000466222 H3BUA1 57 aa14.32□□□□□ -0.12
CAPN3-209ENST00000466222 HBBP68871 147 aa14.32□□□□□ -0.12
CAPN3-209ENST00000466222 LINC01006Q8NI28 216 aa14.32□□□□□ -0.12
CAPN3-209ENST00000466222 TCF21O43680 179 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 BRI3O95415 125 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 P01737 135 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 TCTEX1D4Q5JR98 221 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 KLHDC1Q8N7A1 406 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 ALKBH7Q9BT30 221 aaPredicted RBP14.31□□□□□ -0.12
CAPN3-209ENST00000466222 TRBV7-1A0A0A6YYK4 115 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 PMCHL1Q16048 86 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 TDRG1Q3Y452 100 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 GDF5OSQ5U4N7 250 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 C11orf44Q8N8P7 122 aa14.31□□□□□ -0.12
CAPN3-209ENST00000466222 DAZAP1Q96EP5 407 aaKnown RBP14.31□□□□□ -0.12
CAPN3-209ENST00000466222 SLC25A39Q9BZJ4 359 aaPredicted RBP14.31□□□□□ -0.12
CAPN3-209ENST00000466222 HSBP1O75506 76 aa14.3□□□□□ -0.12
CAPN3-209ENST00000466222 C3orf79P0CE67 100 aa14.3□□□□□ -0.12
CAPN3-209ENST00000466222 FCGR2BP31994 310 aaPredicted RBP14.3□□□□□ -0.12
CAPN3-209ENST00000466222 CTRLP40313 264 aa14.3□□□□□ -0.12
CAPN3-209ENST00000466222 LYZP61626 148 aa14.3□□□□□ -0.12
CAPN3-209ENST00000466222 C18orf65Q6ZTR6 163 aa14.3□□□□□ -0.12
CAPN3-209ENST00000466222 OR4X2Q8NGF9 303 aa14.3□□□□□ -0.12
CAPN3-209ENST00000466222 USMG5Q96IX5 58 aa14.3□□□□□ -0.12
CAPN3-209ENST00000466222 TXN2Q99757 166 aa14.3□□□□□ -0.12
CAPN3-209ENST00000466222 RNF114Q9Y508 228 aa14.3□□□□□ -0.12
CAPN3-209ENST00000466222 NPIPB6E9PJ23 425 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 S100A7AQ86SG5 101 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 JMJD8Q96S16 334 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 RPH3ALQ9UNE2 315 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 JMJD1CQ15652 2540 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 IL4P05112 153 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 FOXE3Q13461 319 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 DMRTA1Q5VZB9 504 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 Q86TA4 180 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 LYPD1Q8N2G4 141 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 ZNF491Q8N8L2 437 aa14.29□□□□□ -0.12
CAPN3-209ENST00000466222 TRAV30A0A087WSZ9 112 aa14.28□□□□□ -0.12
CAPN3-209ENST00000466222 HAX1O00165 279 aa14.28□□□□□ -0.12
CAPN3-209ENST00000466222 LEMD1Q68G75 181 aa14.28□□□□□ -0.12
CAPN3-209ENST00000466222 RBPMS2Q6ZRY4 209 aaKnown RBP14.28□□□□□ -0.12
CAPN3-209ENST00000466222 UQCR10Q9UDW1 63 aa14.28□□□□□ -0.12
CAPN3-209ENST00000466222 C20orf202A1L168 122 aa14.27□□□□□ -0.12
CAPN3-209ENST00000466222 NTF3P20783 257 aa14.27□□□□□ -0.12
CAPN3-209ENST00000466222 SPATA45Q537H7 98 aa14.27□□□□□ -0.12
CAPN3-209ENST00000466222 SHANK2-AS3Q9BTD1 123 aa14.27□□□□□ -0.12
CAPN3-209ENST00000466222 A0A0G2JLM5 398 aa14.27□□□□□ -0.13
CAPN3-209ENST00000466222 ELANEP08246 267 aa14.27□□□□□ -0.13
CAPN3-209ENST00000466222 CAMPP49913 170 aa14.27□□□□□ -0.13
CAPN3-209ENST00000466222 BPIFA4PQ86YQ2 179 aa14.27□□□□□ -0.13
CAPN3-209ENST00000466222 C16orf95Q9H693 158 aa14.27□□□□□ -0.13
CAPN3-209ENST00000466222 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP14.26□□□□□ -0.13
CAPN3-209ENST00000466222 H3BRN7 92 aa14.26□□□□□ -0.13
CAPN3-209ENST00000466222 ARL3P36405 182 aa14.26□□□□□ -0.13
CAPN3-209ENST00000466222 C16orf54Q6UWD8 224 aa14.26□□□□□ -0.13
CAPN3-209ENST00000466222 TCF24Q7RTU0 167 aa14.26□□□□□ -0.13
CAPN3-209ENST00000466222 FAM19A2Q8N3H0 131 aa14.26□□□□□ -0.13
CAPN3-209ENST00000466222 OR4F17Q8NGA8 305 aa14.26□□□□□ -0.13
CAPN3-209ENST00000466222 MYOZ3Q8TDC0 251 aa14.26□□□□□ -0.13
CAPN3-209ENST00000466222 RNF125Q96EQ8 232 aa14.26□□□□□ -0.13
CAPN3-209ENST00000466222 WI2-2373I1.2A0A1W2PRP0 233 aa14.25□□□□□ -0.13
CAPN3-209ENST00000466222 TMEM89A2RUT3 159 aa14.25□□□□□ -0.13
CAPN3-209ENST00000466222 M0R2Z0 102 aa14.25□□□□□ -0.13
CAPN3-209ENST00000466222 LINC00322Q6ZN03 302 aaPredicted RBP14.25□□□□□ -0.13
CAPN3-209ENST00000466222 RNF152Q8N8N0 203 aa14.25□□□□□ -0.13
CAPN3-209ENST00000466222 TMEM75Q8N9X5 138 aa14.25□□□□□ -0.13
CAPN3-209ENST00000466222 CHCHD1Q96BP2 118 aaKnown RBP14.25□□□□□ -0.13
CAPN3-209ENST00000466222 K7EQM0 130 aa14.25□□□□□ -0.13
CAPN3-209ENST00000466222 GTSF1Q8WW33 167 aa14.25□□□□□ -0.13
CAPN3-209ENST00000466222 SGK494Q96LW2 274 aa14.25□□□□□ -0.13
CAPN3-209ENST00000466222 ZFP30Q9Y2G7 519 aa14.25□□□□□ -0.13
CAPN3-209ENST00000466222 TRBV19A0A075B6N1 114 aa14.24□□□□□ -0.13
CAPN3-209ENST00000466222 ZNF207O43670 478 aaKnown RBP14.24□□□□□ -0.13
CAPN3-209ENST00000466222 CD28P10747 220 aa14.24□□□□□ -0.13
CAPN3-209ENST00000466222 BTF3P20290 206 aaKnown RBP14.24□□□□□ -0.13
CAPN3-209ENST00000466222 FOXA3P55318 350 aaPredicted RBP14.24□□□□□ -0.13
CAPN3-209ENST00000466222 RNASEKQ6P5S7 137 aaKnown RBP14.24□□□□□ -0.13
CAPN3-209ENST00000466222 UNQ9165/PRO28630Q6UXU0 137 aa14.24□□□□□ -0.13
CAPN3-209ENST00000466222 OR2D3Q8NGH3 330 aa14.24□□□□□ -0.13
CAPN3-209ENST00000466222 SSBP4Q9BWG4 385 aaPredicted RBP14.24□□□□□ -0.13
CAPN3-209ENST00000466222 DEFB136Q30KP8 78 aa14.23□□□□□ -0.13
CAPN3-209ENST00000466222 KHDC1LQ5JSQ8 128 aa14.23□□□□□ -0.13
CAPN3-209ENST00000466222 ZFAND3Q9H8U3 227 aa14.23□□□□□ -0.13
CAPN3-209ENST00000466222 PEF1Q9UBV8 284 aaKnown RBP14.23□□□□□ -0.13
CAPN3-209ENST00000466222 IGLV2-11P01706 119 aa14.23□□□□□ -0.13
CAPN3-209ENST00000466222 IGLC2P0DOY2 106 aa14.23□□□□□ -0.13
CAPN3-209ENST00000466222 IGLC3P0DOY3 106 aa14.23□□□□□ -0.13
CAPN3-209ENST00000466222 PGLYRP4Q96LB8 373 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms