RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 C19orf54Q5BKX5 351 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 ZNF841Q6ZN19 808 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 CEND1Q8N111 149 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 ZC2HC1AQ96GY0 325 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 CRYBA4P53673 196 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 PAX8Q06710 450 aa5.6□□□□□ -1.51
SYNE1-216ENST00000461872 GEMIN7Q9H840 131 aaKnown RBP5.6□□□□□ -1.51
SYNE1-216ENST00000461872 ACYP1P07311 99 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 CD33P20138 364 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 FAM27E3Q08E93 113 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 MED13LQ71F56 2210 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 A0A1B0GUS0 222 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 IGLV2-8P01709 118 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 CITED1Q99966 193 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 TM2D2Q9BX73 214 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 DSCAML1Q8TD84 2053 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 IGHV3-72A0A0B4J1Y9 119 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 M0R2P5 195 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 COX8CQ7Z4L0 72 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 GAGE2BQ13066 116 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 DAZAP2Q15038 168 aaPredicted RBP5.59□□□□□ -1.51
SYNE1-216ENST00000461872 GAGE2EQ4V326 116 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 ZNF491Q8N8L2 437 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 C18orf15Q96N68 181 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 GAGE2DQ9UEU5 116 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 MYMXA0A1B0GTQ4 84 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 UBE2E1P51965 193 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 RRN3P1Q2M238 152 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 TMEM158Q8WZ71 300 aa5.59□□□□□ -1.51
SYNE1-216ENST00000461872 CCL21O00585 134 aa5.59□□□□□ -1.52
SYNE1-216ENST00000461872 BRWD1-AS2P59051 145 aa5.59□□□□□ -1.52
SYNE1-216ENST00000461872 TCTEX1D4Q5JR98 221 aa5.59□□□□□ -1.52
SYNE1-216ENST00000461872 ERG28Q9UKR5 140 aa5.59□□□□□ -1.52
SYNE1-216ENST00000461872 TAX1BP3O14907 124 aa5.59□□□□□ -1.52
SYNE1-216ENST00000461872 DSCAMO60469 2012 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 GAGE12HA6NDE8 117 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 PRSS47A8MTI9 375 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 PMVKQ15126 192 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 DMRTC2Q8IXT2 367 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-216ENST00000461872 IGHV3-21A0A0B4J1V1 117 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 SRRM4A7MD48 611 aaKnown RBP5.58□□□□□ -1.52
SYNE1-216ENST00000461872 SPINK2P20155 84 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 ADAMTSL5Q6ZMM2 481 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 I3L2K1 104 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 IFITM1P13164 125 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 TMEM170BQ5T4T1 132 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 LCNL1Q6ZST4 164 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 IGKV1-17P01599 117 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 TRGV3P03979 118 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 KLRD1Q13241 179 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 FOXI2Q6ZQN5 318 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 DNAL4O96015 105 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 CKS1BP61024 79 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 ANAPC13Q9BS18 74 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 TSPAN13O95857 204 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 FOXE3Q13461 319 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 UNQ6494/PRO21346Q6UXR6 183 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 SPAG8Q99932 426 aaPredicted RBP5.58□□□□□ -1.52
SYNE1-216ENST00000461872 EP400Q96L91 3159 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 NDUFA4O00483 81 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 NUPR1O60356 82 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 NDUFS7O75251 213 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 NDUFA3O95167 84 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 LINC00479Q96M42 142 aa5.58□□□□□ -1.52
SYNE1-216ENST00000461872 TRAV41A0A0B4J266 112 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 Q8N7P7 452 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 DOPEY1Q5JWR5 2465 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 IGKV1OR2-108A0A075B7D4 117 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 FAM90A27PA6NNH2 459 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 CITED2Q99967 270 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-216ENST00000461872 DAZ1Q9NQZ3 744 aaKnown RBP5.57□□□□□ -1.52
SYNE1-216ENST00000461872 EFNA4P52798 201 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 C10orf55Q5SWW7 151 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 TNFRSF18Q9Y5U5 241 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 J3KRW8 73 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 IGLV1-47P01700 117 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 DYNLRB2Q8TF09 96 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 TRAV8-1A0A0A6YYK1 113 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-216ENST00000461872 WI2-2373I1.2A0A1W2PRP0 233 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 PF4V1P10720 104 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 ZNF56Q15929 161 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 TRPT1Q86TN4 253 aaKnown RBP5.57□□□□□ -1.52
SYNE1-216ENST00000461872 IGLV2-23P01705 113 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 C16orf54Q6UWD8 224 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 TIMM17AQ99595 171 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 IGLV11-55A0A075B6I3 123 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 H3BTX0 84 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 C2orf66Q6UXQ4 117 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 PIP4P1Q86T03 277 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 TEN1Q86WV5 123 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 C1QTNF4Q9BXJ3 329 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 UBTD1Q9HAC8 227 aa5.57□□□□□ -1.52
SYNE1-216ENST00000461872 RBX1P62877 108 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 FBXL19-AS1Q494R0 122 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 ZNF672Q499Z4 452 aaPredicted RBP5.56□□□□□ -1.52
SYNE1-216ENST00000461872 PATE2Q6UY27 113 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 ZNF503Q96F45 646 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 SPAARA0A1B0GVQ0 90 aa5.56□□□□□ -1.52
SYNE1-216ENST00000461872 PIEZO1Q92508 2521 aa5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms