RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-215ENST00000460912 ZNF80P51504 273 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-215ENST00000460912 TM4SF20Q53R12 229 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 LINC01545Q5VT33 79 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 SHISA2Q6UWI4 295 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 CCDC140Q96MF4 163 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 C8orf49Q96NF6 230 aa6.77□□□□□ -1.33
SYNE1-215ENST00000460912 LOC105371242A0A075B767 164 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 IGHV2-70DA0A0C4DH43 119 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 H3BTX0 84 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 IGLL1P15814 213 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 COX7A1P24310 79 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 EFNA4P52798 201 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 LCN12Q6JVE5 192 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 BORCS7Q96B45 105 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 ZNF331Q9NQX6 463 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-215ENST00000460912 SERTAD4Q9NUC0 356 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 PSG8Q9UQ74 426 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 LAMTOR2Q9Y2Q5 125 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 UBE2V1Q13404 147 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 C10orf105Q8TEF2 133 aa6.76□□□□□ -1.33
SYNE1-215ENST00000460912 TRAV9-2A0A087WT02 112 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 TRAV8-2A0A0B4J237 113 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 FSHBP01225 129 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 P01737 135 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 ARMS2P0C7Q2 107 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 FOXE3Q13461 319 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 GOLT1AQ6ZVE7 132 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 ARPC1AQ92747 370 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 RNF185Q96GF1 192 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 ATP6V0BQ99437 205 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 DNAH3Q8TD57 4116 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 A0A1W2PRD5 423 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 A0A1W2PRF3 423 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 A0A1W2PRM7 423 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 FGF6P10767 208 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 LYZP61626 148 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 UBE2G1P62253 170 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 BPIFA4PQ86YQ2 179 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 FAM110DQ8TAY7 271 aaPredicted RBP6.75□□□□□ -1.33
SYNE1-215ENST00000460912 FAM19A4Q96LR4 140 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 SCRT2Q9NQ03 307 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 CENPEQ02224 2701 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 RBAKDNA6NC62 111 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 NUDT3O95989 172 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 TSPOP30536 169 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 PMCHL1Q16048 86 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 PGLYRP4Q96LB8 373 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 UBTD1Q9HAC8 227 aa6.75□□□□□ -1.33
SYNE1-215ENST00000460912 GAGE12BA1L429 117 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 OR2T8A6NH00 312 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 SYS1-DBNDD2H3BUS1 97 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 NDUFS7O75251 213 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 UBE2E1P51965 193 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 ARF6P62330 175 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 Q6AWC8 147 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 ONECUT1Q9UBC0 465 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 ANK2Q01484 3957 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 CHEK1O14757 476 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 FCER1GP30273 86 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 IGLV2-18A0A075B6J9 118 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 TMEM238LA0A1B0GVL6 79 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 BUB3O43684 328 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 KRTAP1-1Q07627 177 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 GPHB5Q86YW7 130 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 PRR25Q96S07 402 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 UQCR10Q9UDW1 63 aa6.74□□□□□ -1.33
SYNE1-215ENST00000460912 PRRC2AP48634 2157 aaKnown RBP6.74□□□□□ -1.33
SYNE1-215ENST00000460912 ANKHD1Q8IWZ3 2542 aaKnown RBP6.73□□□□□ -1.33
SYNE1-215ENST00000460912 M0R3E3 92 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 SOCS3O14543 225 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 IL4P05112 153 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 FAM106CPP0CH98 169 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 FAM106AQ4KMX7 169 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 IGHV4-4A0A075B6R2 117 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 C5orf56Q8N8D9 126 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 ZMAT4Q9H898 229 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 BEX4Q9NWD9 120 aaPredicted RBP6.73□□□□□ -1.33
SYNE1-215ENST00000460912 TP73-AS1Q9UF72 201 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 HILPDAQ9Y5L2 63 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 MFAP4P55083 255 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 LINC01559Q495D7 138 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 SFTA2Q6UW10 78 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 C2orf91Q6ZV80 131 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 APRG1Q8IVJ8 170 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 ASCL2Q99929 193 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 PMCHL2Q9BQD1 86 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 ZNF747Q9BV97 191 aa6.73□□□□□ -1.33
SYNE1-215ENST00000460912 A0A1B0GUT8 65 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 LINC01548A6NM66 108 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 SH2D1AO60880 128 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 ROS1P08922 2347 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 OR5AL1P0C617 328 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 LOXL1Q08397 574 aaPredicted RBP6.72□□□□□ -1.33
SYNE1-215ENST00000460912 PRSS57Q6UWY2 283 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 PRNTQ86SH4 94 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 MXRA5Q9NR99 2828 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 CENPVL3A0A0U1RRI6 287 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 AZU1P20160 251 aa6.72□□□□□ -1.33
SYNE1-215ENST00000460912 MCRIP2Q9BUT9 160 aaKnown RBP6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms