RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 G0S2P27469 103 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 ZNF575Q86XF7 245 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 FER1L6-AS1Q8NA97 138 aa11.59□□□□□ -0.55
LDLR-202ENST00000455727 SPTAN1Q13813 2472 aaKnown RBP11.59□□□□□ -0.55
LDLR-202ENST00000455727 SYS1-DBNDD2H3BUS1 97 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 RNF182Q8N6D2 247 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 PSMG3-AS1Q96PY0 264 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 DOPEY1Q5JWR5 2465 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 TRAV8-2A0A0B4J237 113 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 IGHV3-66A0A0C4DH42 116 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 FOSL1P15407 271 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 PPIFP30405 207 aaKnown RBP11.58□□□□□ -0.56
LDLR-202ENST00000455727 DSCR9P59020 149 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 ERCC8Q13216 396 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 USMG5Q96IX5 58 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 CNFNQ9BYD5 112 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 AP5S1Q9NUS5 200 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 PPP1R14DQ9NXH3 145 aa11.58□□□□□ -0.56
LDLR-202ENST00000455727 TMEM213A2RRL7 107 aa11.57□□□□□ -0.56
LDLR-202ENST00000455727 ZNF25P17030 456 aaPredicted RBP11.57□□□□□ -0.56
LDLR-202ENST00000455727 ZNF138P52744 262 aa11.57□□□□□ -0.56
LDLR-202ENST00000455727 LINC01559Q495D7 138 aa11.57□□□□□ -0.56
LDLR-202ENST00000455727 C8orf86Q6ZUL3 223 aa11.57□□□□□ -0.56
LDLR-202ENST00000455727 LINC00527Q9UJ94 153 aa11.57□□□□□ -0.56
LDLR-202ENST00000455727 HSPB8Q9UJY1 196 aa11.57□□□□□ -0.56
LDLR-202ENST00000455727 ARL3P36405 182 aa11.57□□□□□ -0.56
LDLR-202ENST00000455727 ATOH7Q8N100 152 aa11.57□□□□□ -0.56
LDLR-202ENST00000455727 B4DSR2 109 aa11.56□□□□□ -0.56
LDLR-202ENST00000455727 H3BUX3 64 aa11.56□□□□□ -0.56
LDLR-202ENST00000455727 NDUFA4O00483 81 aa11.56□□□□□ -0.56
LDLR-202ENST00000455727 SPATA12Q7Z6I5 190 aa11.56□□□□□ -0.56
LDLR-202ENST00000455727 ORMDL3Q8N138 153 aa11.56□□□□□ -0.56
LDLR-202ENST00000455727 PRSS3P2Q8NHM4 247 aa11.56□□□□□ -0.56
LDLR-202ENST00000455727 MAP1LC3CQ9BXW4 147 aa11.56□□□□□ -0.56
LDLR-202ENST00000455727 AGPAT4-IT1Q9H0P7 198 aa11.56□□□□□ -0.56
LDLR-202ENST00000455727 IGHV3OR16-13A0A075B7E8 117 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 IGHV3-74A0A0B4J1X5 117 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 ZNF207O43670 478 aaKnown RBP11.55□□□□□ -0.56
LDLR-202ENST00000455727 ORM1P02763 201 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 CSN3P07498 182 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 GATA3P23771 443 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 HIST1H1AQ02539 215 aaPredicted RBP11.55□□□□□ -0.56
LDLR-202ENST00000455727 PET117Q6UWS5 81 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 C9orf47Q6ZRZ4 202 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 GLMPQ8WWB7 406 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 IGSF10Q6WRI0 2623 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 D6R8Y8 96 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 LINC00173Q6ZV60 143 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 FA2HQ7L5A8 372 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 AMN1Q8IY45 258 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 TMEM191AQ9H0A3 160 aa11.55□□□□□ -0.56
LDLR-202ENST00000455727 TWIST1Q15672 202 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 LY6EQ16553 131 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 MAJINQ3KP22 176 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 TMEM78Q5T7P6 136 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 IL17RELQ6ZVW7 336 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 PRELID3AQ96N28 172 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 COL12A1Q99715 3063 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 IGHV3-49A0A0A0MS15 119 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 OR4C46A6NHA9 309 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 MRPL51Q4U2R6 128 aaKnown RBP11.54□□□□□ -0.56
LDLR-202ENST00000455727 OR10AG1Q8NH19 301 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 TMEM208Q9BTX3 173 aa11.54□□□□□ -0.56
LDLR-202ENST00000455727 IGLL1P15814 213 aa11.53□□□□□ -0.56
LDLR-202ENST00000455727 BATFQ16520 125 aa11.53□□□□□ -0.56
LDLR-202ENST00000455727 Q6ZN92 141 aa11.53□□□□□ -0.56
LDLR-202ENST00000455727 C9orf139Q6ZV77 190 aa11.53□□□□□ -0.56
LDLR-202ENST00000455727 VPS13CQ709C8 3753 aa11.53□□□□□ -0.56
LDLR-202ENST00000455727 SIGLEC8Q9NYZ4 499 aa11.53□□□□□ -0.56
LDLR-202ENST00000455727 ZNF580Q9UK33 172 aa11.53□□□□□ -0.56
LDLR-202ENST00000455727 LENEPQ9Y5L5 61 aa11.53□□□□□ -0.56
LDLR-202ENST00000455727 DLEU1O43261 78 aa11.52□□□□□ -0.57
LDLR-202ENST00000455727 IFI27P40305 119 aaPredicted RBP11.52□□□□□ -0.57
LDLR-202ENST00000455727 HNRNPA3P51991 378 aaKnown RBP11.52□□□□□ -0.57
LDLR-202ENST00000455727 C16orf92Q96LL3 132 aa11.52□□□□□ -0.57
LDLR-202ENST00000455727 MRPS16Q9Y3D3 137 aaKnown RBP11.52□□□□□ -0.57
LDLR-202ENST00000455727 IGLV1-40P01703 118 aa11.52□□□□□ -0.57
LDLR-202ENST00000455727 SLC25A16P16260 332 aa11.52□□□□□ -0.57
LDLR-202ENST00000455727 ZNF747Q9BV97 191 aa11.52□□□□□ -0.57
LDLR-202ENST00000455727 ST20Q9HBF5 79 aa11.52□□□□□ -0.57
LDLR-202ENST00000455727 FLNCQ14315 2725 aa11.52□□□□□ -0.57
LDLR-202ENST00000455727 IGKV3D-20A0A0C4DH25 116 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 MUC21A0A0G2JKD1 596 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 A0A0G2JLM5 398 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 MUC21A0A140T8X8 626 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 TRBV12-3P01733 135 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 PPBPP02775 128 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 CKS2P33552 79 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 BLCAPP62952 87 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 GAGE1Q13065 139 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 MUC21Q5SSG8 566 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 UNQ9165/PRO28630Q6UXU0 137 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 ZFHX3Q15911 3703 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 USP9XQ93008 2570 aaPredicted RBP11.51□□□□□ -0.57
LDLR-202ENST00000455727 AVPP01185 164 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 TSPOP30536 169 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 COL5A1-AS1Q5SY13 56 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 LINC01545Q5VT33 79 aa11.51□□□□□ -0.57
LDLR-202ENST00000455727 CELSR1Q9NYQ6 3014 aa11.5□□□□□ -0.57
LDLR-202ENST00000455727 SMAD7O15105 426 aaKnown RBP11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms