RNA–Protein interactions for RNA: ENST00000449744.1

CHD3-205, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 880 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-205ENST00000449744 SMIM3Q9BZL3 60 aa10.74□□□□□ -0.69
CHD3-205ENST00000449744 AGPAT4-IT1Q9H0P7 198 aa10.74□□□□□ -0.69
CHD3-205ENST00000449744 DNAH6Q9C0G6 4158 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 GAGE12BA1L429 117 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 OR7C2O60412 319 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 GAGE7O76087 117 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 GAGE12FP0CL80 117 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 GAGE12GP0CL81 117 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 GAGE12IP0CL82 117 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 RPL12P30050 165 aaKnown RBP10.73□□□□□ -0.69
CHD3-205ENST00000449744 FAM3BP58499 235 aaPredicted RBP10.73□□□□□ -0.69
CHD3-205ENST00000449744 FFAR4Q5NUL3 377 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 TMEM78Q5T7P6 136 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 RNF141Q8WVD5 230 aa10.73□□□□□ -0.69
CHD3-205ENST00000449744 IGKV2-40A0A087WW87 121 aaPredicted RBP10.72□□□□□ -0.69
CHD3-205ENST00000449744 PRSS29PA6NIE9 313 aa10.72□□□□□ -0.69
CHD3-205ENST00000449744 IGKV2D-40P01614 121 aaPredicted RBP10.72□□□□□ -0.69
CHD3-205ENST00000449744 GPX1P07203 203 aa10.72□□□□□ -0.69
CHD3-205ENST00000449744 RNASE4P34096 147 aaKnown RBP10.72□□□□□ -0.69
CHD3-205ENST00000449744 CSN1S1P47710 185 aa10.72□□□□□ -0.69
CHD3-205ENST00000449744 OR5I1Q13606 314 aa10.72□□□□□ -0.69
CHD3-205ENST00000449744 SOHLH1Q5JUK2 328 aa10.72□□□□□ -0.69
CHD3-205ENST00000449744 C9orf47Q6ZRZ4 202 aa10.72□□□□□ -0.69
CHD3-205ENST00000449744 FXYD5Q96DB9 178 aa10.72□□□□□ -0.69
CHD3-205ENST00000449744 MBD2Q9UBB5 411 aa10.72□□□□□ -0.69
CHD3-205ENST00000449744 FRAS1Q86XX4 4008 aa10.72□□□□□ -0.69
CHD3-205ENST00000449744 KLLNB2CW77 178 aa10.71□□□□□ -0.69
CHD3-205ENST00000449744 CCL18P55774 89 aa10.71□□□□□ -0.69
CHD3-205ENST00000449744 TAS2R45P59539 299 aa10.71□□□□□ -0.69
CHD3-205ENST00000449744 BTN1A1Q13410 526 aa10.71□□□□□ -0.69
CHD3-205ENST00000449744 LINC00612Q8N6U2 182 aa10.71□□□□□ -0.69
CHD3-205ENST00000449744 ZNF680Q8NEM1 530 aa10.71□□□□□ -0.69
CHD3-205ENST00000449744 PHYHIPLQ96FC7 376 aa10.71□□□□□ -0.69
CHD3-205ENST00000449744 FAM19A4Q96LR4 140 aa10.71□□□□□ -0.69
CHD3-205ENST00000449744 RTL8CO15255 209 aa10.7□□□□□ -0.7
CHD3-205ENST00000449744 NMBP08949 121 aa10.7□□□□□ -0.7
CHD3-205ENST00000449744 CRISP2P16562 243 aa10.7□□□□□ -0.7
CHD3-205ENST00000449744 RANP62826 216 aaKnown RBP10.7□□□□□ -0.7
CHD3-205ENST00000449744 UBE2L3P68036 154 aaKnown RBP10.7□□□□□ -0.7
CHD3-205ENST00000449744 CD300CQ08708 224 aa10.7□□□□□ -0.7
CHD3-205ENST00000449744 DAZ2Q13117 558 aaKnown RBP10.7□□□□□ -0.7
CHD3-205ENST00000449744 KHDC3LQ587J8 217 aa10.7□□□□□ -0.7
CHD3-205ENST00000449744 Q6ZR54 194 aa10.7□□□□□ -0.7
CHD3-205ENST00000449744 EIF4E3Q8N5X7 224 aaKnown RBP10.7□□□□□ -0.7
CHD3-205ENST00000449744 GNPNAT1Q96EK6 184 aaPredicted RBP10.7□□□□□ -0.7
CHD3-205ENST00000449744 VGLL1Q99990 258 aa10.7□□□□□ -0.7
CHD3-205ENST00000449744 RGS13O14921 159 aa10.69□□□□□ -0.7
CHD3-205ENST00000449744 ZNF324O75467 553 aaPredicted RBP10.69□□□□□ -0.7
CHD3-205ENST00000449744 M6PRP20645 277 aa10.69□□□□□ -0.7
CHD3-205ENST00000449744 LYPD1Q8N2G4 141 aa10.69□□□□□ -0.7
CHD3-205ENST00000449744 LINC00467Q9BRT7 94 aa10.69□□□□□ -0.7
CHD3-205ENST00000449744 Q9H3A6 140 aa10.69□□□□□ -0.7
CHD3-205ENST00000449744 GSN-AS1Q9NRJ2 163 aa10.69□□□□□ -0.7
CHD3-205ENST00000449744 ZNF492Q9P255 531 aa10.69□□□□□ -0.7
CHD3-205ENST00000449744 HERC2O95714 4834 aa10.69□□□□□ -0.7
CHD3-205ENST00000449744 TRAV26-1A0A087WT03 109 aa10.68□□□□□ -0.7
CHD3-205ENST00000449744 A0A0J9YY99 117 aa10.68□□□□□ -0.7
CHD3-205ENST00000449744 ZNF138P52744 262 aa10.68□□□□□ -0.7
CHD3-205ENST00000449744 ACOT6Q3I5F7 207 aaPredicted RBP10.68□□□□□ -0.7
CHD3-205ENST00000449744 ANXA2RQ3ZCQ2 193 aa10.68□□□□□ -0.7
CHD3-205ENST00000449744 C1orf134Q5TEV5 83 aa10.68□□□□□ -0.7
CHD3-205ENST00000449744 Q6ZTI0 123 aa10.68□□□□□ -0.7
CHD3-205ENST00000449744 ZFAND2AQ8N6M9 145 aa10.68□□□□□ -0.7
CHD3-205ENST00000449744 ZNF503Q96F45 646 aa10.68□□□□□ -0.7
CHD3-205ENST00000449744 ALG5Q9Y673 324 aa10.68□□□□□ -0.7
CHD3-205ENST00000449744 NACAE9PAV3 2078 aa10.67□□□□□ -0.7
CHD3-205ENST00000449744 TRGV2A0A075B6R0 118 aa10.67□□□□□ -0.7
CHD3-205ENST00000449744 A0A1W2PPV4 95 aa10.67□□□□□ -0.7
CHD3-205ENST00000449744 C11orf72Q8NBR9 251 aa10.67□□□□□ -0.7
CHD3-205ENST00000449744 Q8TAT8 98 aa10.67□□□□□ -0.7
CHD3-205ENST00000449744 RXFP4Q8TDU9 374 aa10.67□□□□□ -0.7
CHD3-205ENST00000449744 ARPC5LQ9BPX5 153 aa10.67□□□□□ -0.7
CHD3-205ENST00000449744 LINC00588Q9Y4M8 146 aa10.67□□□□□ -0.7
CHD3-205ENST00000449744 IGHV1OR15-1A0A075B7D0 117 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 TRGV1A0A0A0MS02 117 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 TRBV7-9A0A0J9YWB2 115 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 A0A1B0GVY2 172 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 RBAKDNA6NC62 111 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 PTTG1O95997 202 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 HOXA5P20719 270 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 FAM74A1Q5RGS3 127 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 PRR9Q5T870 116 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 ZNRF2Q8NHG8 242 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 TMPRSS5Q9H3S3 457 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 WFDC1Q9HC57 220 aa10.66□□□□□ -0.7
CHD3-205ENST00000449744 TCL1AP56279 114 aa10.65□□□□□ -0.7
CHD3-205ENST00000449744 IBA57Q5T440 356 aaKnown RBP10.65□□□□□ -0.7
CHD3-205ENST00000449744 SSX7Q7RTT5 188 aa10.65□□□□□ -0.7
CHD3-205ENST00000449744 CMTM2Q8TAZ6 248 aa10.65□□□□□ -0.7
CHD3-205ENST00000449744 HYLS1Q96M11 299 aa10.65□□□□□ -0.7
CHD3-205ENST00000449744 MED28Q9H204 178 aa10.65□□□□□ -0.7
CHD3-205ENST00000449744 KLF12Q9Y4X4 402 aa10.65□□□□□ -0.7
CHD3-205ENST00000449744 NBDYA0A0U1RRE5 68 aa10.64□□□□□ -0.71
CHD3-205ENST00000449744 H3BNG1 76 aa10.64□□□□□ -0.71
CHD3-205ENST00000449744 EIF3GO75821 320 aaKnown RBP eCLIP10.64□□□□□ -0.71
CHD3-205ENST00000449744 ZNF266Q14584 549 aa10.64□□□□□ -0.71
CHD3-205ENST00000449744 PQLC2Q6ZP29 291 aa10.64□□□□□ -0.71
CHD3-205ENST00000449744 OR10G4Q8NGN3 311 aa10.64□□□□□ -0.71
CHD3-205ENST00000449744 OR10G9Q8NGN4 311 aa10.64□□□□□ -0.71
CHD3-205ENST00000449744 OR10G7Q8NGN6 311 aa10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms