RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 H3BQ15 152 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 PLA2G10O15496 165 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 PRM2P04554 102 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 S100A10P60903 97 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 CYCSP99999 105 aaKnown RBP4.95□□□□□ -1.62
VPS41-208ENST00000448833 SLAQ13239 276 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 GFI1BQ5VTD9 330 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 SSX7Q7RTT5 188 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 TMEM252Q8N6L7 170 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 LINC00612Q8N6U2 182 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 RNF141Q8WVD5 230 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 S100ZQ8WXG8 99 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 C18orf15Q96N68 181 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 LINC00467Q9BRT7 94 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 KRTAP17-1Q9BYP8 105 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 SLC25A31Q9H0C2 315 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 Q9H8V8 135 aa4.95□□□□□ -1.62
VPS41-208ENST00000448833 DNAH17Q9UFH2 4485 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 TRGV2A0A075B6R0 118 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 TRBV7-9A0A0J9YWB2 115 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 UBE2L5PA0A1B0GUS4 154 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 GAGE12BA1L429 117 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 C7orf71A4D174 169 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 FAM24AA6NFZ4 105 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 CCSO14618 274 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 GAGE7O76087 117 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 GPX1P07203 203 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 GAGE12FP0CL80 117 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 GAGE12GP0CL81 117 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 GAGE12IP0CL82 117 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 CT45A10P0DMU9 189 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 FGF7P21781 194 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 ANXA2RQ3ZCQ2 193 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 TMEM78Q5T7P6 136 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 MIC13Q5XKP0 118 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 C9orf47Q6ZRZ4 202 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 IQCF2Q8IXL9 164 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 EIF4E3Q8N5X7 224 aaKnown RBP4.94□□□□□ -1.62
VPS41-208ENST00000448833 UPK3BQ9BT76 320 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 ZNF586Q9NXT0 402 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 LINC00588Q9Y4M8 146 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 PKD1P98161 4303 aa4.94□□□□□ -1.62
VPS41-208ENST00000448833 TRAV5A0A0B4J249 113 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 C16orf90A8MZG2 172 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 KLLNB2CW77 178 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 PRAC2D3DTV9 90 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 E5RGE8 158 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 C17orf112F2Z3M2 114 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 SLC17A3O00476 420 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 CDK2AP2O75956 126 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 SNRPCP09234 159 aaKnown RBP4.93□□□□□ -1.62
VPS41-208ENST00000448833 H2AFB1P0C5Y9 115 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 NBEAP1P0C6P0 100 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 CRISP2P16562 243 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 CSN1S1P47710 185 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 RAB32Q13637 225 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 IBA57Q5T440 356 aaKnown RBP4.93□□□□□ -1.62
VPS41-208ENST00000448833 MORN5Q5VZ52 161 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 LYPD1Q8N2G4 141 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 NPCDR1Q9BY65 106 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 MRPL32Q9BYC8 188 aaKnown RBP4.93□□□□□ -1.62
VPS41-208ENST00000448833 NMES1Q9C002 83 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 Q9H3A6 140 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 C11orf1Q9H5F2 150 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 DNAH2Q9P225 4427 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 FAT2Q9NYQ8 4349 aa4.93□□□□□ -1.62
VPS41-208ENST00000448833 TRAV9-2A0A087WT02 112 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 IGSF23A1L1A6 192 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 H3BTX0 84 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 J3KRW8 73 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 K7EP13 123 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 PRAF2O60831 178 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 ZNF324O75467 553 aaPredicted RBP4.92□□□□□ -1.62
VPS41-208ENST00000448833 PET100P0DJ07 73 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 RNASE4P34096 147 aaKnown RBP4.92□□□□□ -1.62
VPS41-208ENST00000448833 IL15RAQ13261 267 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 ENKURQ8TC29 256 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 BLNKQ8WV28 456 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 SEC22CQ9BRL7 303 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 AGPAT4-IT1Q9H0P7 198 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 OR51M1Q9H341 326 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 FUT9Q9Y231 359 aa4.92□□□□□ -1.62
VPS41-208ENST00000448833 MRPS16Q9Y3D3 137 aaKnown RBP4.92□□□□□ -1.62
VPS41-208ENST00000448833 TRGV1A0A0A0MS02 117 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 A0A0J9YY99 117 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 RBAKDNA6NC62 111 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 PAX4O43316 350 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 NDUFB4O95168 129 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 HOXA5P20719 270 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 ZNF138P52744 262 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 TCL1AP56279 114 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 TAS2R45P59539 299 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 NHLH2Q02577 135 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 ASAH1Q13510 395 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 ICAM4Q14773 271 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 KIR3DS1Q14943 382 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 ESRGQ1W209 222 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 FAM74A1Q5RGS3 127 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 Q6ZTI0 123 aa4.91□□□□□ -1.62
VPS41-208ENST00000448833 OR5C1Q8NGR4 320 aa4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 587 ms