RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 PSG3Q16557 428 aa16.11■□□□□ 0.17
PTPRF-207ENST00000436724 KIAA1644Q3SXP7 199 aa16.11■□□□□ 0.17
PTPRF-207ENST00000436724 HIST2H2BDQ6DRA6 164 aa16.11■□□□□ 0.17
PTPRF-207ENST00000436724 BAGE3Q86Y29 109 aa16.11■□□□□ 0.17
PTPRF-207ENST00000436724 KLHDC1Q8N7A1 406 aa16.11■□□□□ 0.17
PTPRF-207ENST00000436724 TMEM75Q8N9X5 138 aa16.11■□□□□ 0.17
PTPRF-207ENST00000436724 NUDT10Q8NFP7 164 aa16.11■□□□□ 0.17
PTPRF-207ENST00000436724 NUDT11Q96G61 164 aa16.11■□□□□ 0.17
PTPRF-207ENST00000436724 NDUFAF3Q9BU61 184 aa16.11■□□□□ 0.17
PTPRF-207ENST00000436724 IZUMO1RA6ND01 250 aa16.1■□□□□ 0.17
PTPRF-207ENST00000436724 CSN1S1P47710 185 aa16.1■□□□□ 0.17
PTPRF-207ENST00000436724 COX19Q49B96 90 aa16.1■□□□□ 0.17
PTPRF-207ENST00000436724 FAM231DQ6ZW35 169 aa16.1■□□□□ 0.17
PTPRF-207ENST00000436724 CHEK1O14757 476 aa16.1■□□□□ 0.17
PTPRF-207ENST00000436724 MRPL54Q6P161 138 aaKnown RBP16.1■□□□□ 0.17
PTPRF-207ENST00000436724 PSG8Q9UQ74 426 aa16.1■□□□□ 0.17
PTPRF-207ENST00000436724 K7EQM0 130 aa16.09■□□□□ 0.17
PTPRF-207ENST00000436724 C18orf65Q6ZTR6 163 aa16.09■□□□□ 0.17
PTPRF-207ENST00000436724 C8orf86Q6ZUL3 223 aa16.09■□□□□ 0.17
PTPRF-207ENST00000436724 DAZ1Q9NQZ3 744 aaKnown RBP16.09■□□□□ 0.17
PTPRF-207ENST00000436724 SETD2Q9BYW2 2564 aaPredicted RBP16.09■□□□□ 0.17
PTPRF-207ENST00000436724 LCN12Q6JVE5 192 aa16.09■□□□□ 0.17
PTPRF-207ENST00000436724 RNF152Q8N8N0 203 aa16.09■□□□□ 0.17
PTPRF-207ENST00000436724 SMIM12Q96EX1 92 aa16.09■□□□□ 0.17
PTPRF-207ENST00000436724 UBE2E2Q96LR5 201 aa16.09■□□□□ 0.17
PTPRF-207ENST00000436724 TRAV8-2A0A0B4J237 113 aa16.08■□□□□ 0.16
PTPRF-207ENST00000436724 LY6G6DO95868 133 aa16.08■□□□□ 0.16
PTPRF-207ENST00000436724 LGALS1P09382 135 aaKnown RBP16.08■□□□□ 0.16
PTPRF-207ENST00000436724 FAM106AQ4KMX7 169 aa16.08■□□□□ 0.16
PTPRF-207ENST00000436724 IGHV4OR15-8A0A075B7B6 117 aa16.07■□□□□ 0.16
PTPRF-207ENST00000436724 A0A087WW49 117 aa16.07■□□□□ 0.16
PTPRF-207ENST00000436724 PRAC2D3DTV9 90 aa16.07■□□□□ 0.16
PTPRF-207ENST00000436724 GPHB5Q86YW7 130 aa16.07■□□□□ 0.16
PTPRF-207ENST00000436724 RHPN1-AS1Q9BWJ2 59 aa16.07■□□□□ 0.16
PTPRF-207ENST00000436724 IGHV7-4-1A0A0J9YVY3 117 aa16.07■□□□□ 0.16
PTPRF-207ENST00000436724 TCTEX1D4Q5JR98 221 aa16.07■□□□□ 0.16
PTPRF-207ENST00000436724 VGLL1Q99990 258 aa16.07■□□□□ 0.16
PTPRF-207ENST00000436724 IGKV3-7A0A075B6H7 116 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 A0A1B0GV90 55 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 ZNF705DP0CH99 300 aaPredicted RBP16.06■□□□□ 0.16
PTPRF-207ENST00000436724 ZNF705BP0CI00 300 aaPredicted RBP16.06■□□□□ 0.16
PTPRF-207ENST00000436724 DEFB136Q30KP8 78 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 ZC2HC1AQ96GY0 325 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 GRAMD2BQ96HH9 432 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 SLC50A1Q9BRV3 221 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 TRBV6-1A0A0K0K1D8 114 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 HLA-DQA1P01909 254 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 SRD5A1P18405 259 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 OR10J3Q5JRS4 329 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 Q8TAT8 98 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 C8orf49Q96NF6 230 aa16.06■□□□□ 0.16
PTPRF-207ENST00000436724 GPX1P07203 203 aa16.05■□□□□ 0.16
PTPRF-207ENST00000436724 RPL11P62913 178 aaKnown RBP16.05■□□□□ 0.16
PTPRF-207ENST00000436724 A0A1W2PS18 150 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 NUP35Q8NFH5 326 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 ZFP30Q9Y2G7 519 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 FLNBO75369 2602 aaKnown RBP16.04■□□□□ 0.16
PTPRF-207ENST00000436724 KIR2DL5BA0A0G2JN68 375 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 KIR2DL5BA0A0G2JPC4 375 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 C19orf71A6NCJ1 209 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 SRIP30626 198 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 SYNJ2BPP57105 145 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 TDRG1Q3Y452 100 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 KIR2DL5AQ8N109 375 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 WIPF2Q8TF74 440 aaPredicted RBP16.04■□□□□ 0.16
PTPRF-207ENST00000436724 RCHY1Q96PM5 261 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 C2orf88Q9BSF0 95 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 SAMD10Q9BYL1 202 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 SMPXQ9UHP9 88 aa16.04■□□□□ 0.16
PTPRF-207ENST00000436724 APCSP02743 223 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 ERCC8Q13216 396 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 KHDC1LQ5JSQ8 128 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 GDF5OSQ5U4N7 250 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 C16orf92Q96LL3 132 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 RNF114Q9Y508 228 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 SERTM2A0A1B0GWG4 89 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 HOXD3P31249 432 aaPredicted RBP16.03■□□□□ 0.16
PTPRF-207ENST00000436724 SLAQ13239 276 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 TMEM160Q9NX00 188 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 HIVEP1P15822 2718 aa16.03■□□□□ 0.16
PTPRF-207ENST00000436724 TMEM213A2RRL7 107 aa16.02■□□□□ 0.16
PTPRF-207ENST00000436724 K7EMT4 169 aa16.02■□□□□ 0.16
PTPRF-207ENST00000436724 CRIP1P50238 77 aa16.02■□□□□ 0.16
PTPRF-207ENST00000436724 ARL6IP6Q8N6S5 226 aa16.02■□□□□ 0.16
PTPRF-207ENST00000436724 P01737 135 aa16.02■□□□□ 0.15
PTPRF-207ENST00000436724 RASL11AQ6T310 242 aa16.02■□□□□ 0.15
PTPRF-207ENST00000436724 TEX43Q6ZNM6 134 aa16.02■□□□□ 0.15
PTPRF-207ENST00000436724 DUX3Q96PT4 197 aa16.02■□□□□ 0.15
PTPRF-207ENST00000436724 ZNF492Q9P255 531 aa16.02■□□□□ 0.15
PTPRF-207ENST00000436724 RNASE1P07998 156 aaKnown RBP16.01■□□□□ 0.15
PTPRF-207ENST00000436724 LBHQ53QV2 105 aaPredicted RBP16.01■□□□□ 0.15
PTPRF-207ENST00000436724 C11orf44Q8N8P7 122 aa16.01■□□□□ 0.15
PTPRF-207ENST00000436724 TSKUQ8WUA8 353 aa16.01■□□□□ 0.15
PTPRF-207ENST00000436724 DAZAP1Q96EP5 407 aaKnown RBP16.01■□□□□ 0.15
PTPRF-207ENST00000436724 C20orf173Q96LM9 149 aa16.01■□□□□ 0.15
PTPRF-207ENST00000436724 RPP21Q9H633 154 aaKnown RBP16.01■□□□□ 0.15
PTPRF-207ENST00000436724 UFC1Q9Y3C8 167 aa16.01■□□□□ 0.15
PTPRF-207ENST00000436724 PRR25Q96S07 402 aa16■□□□□ 0.15
PTPRF-207ENST00000436724 ZNF418Q8TF45 676 aaPredicted RBP16■□□□□ 0.15
PTPRF-207ENST00000436724 KCNS1Q96KK3 526 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 153.9 ms