RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 ERCC8Q13216 396 aa12.83□□□□□ -0.36
LIMK1-203ENST00000435201 PMCHL1Q16048 86 aa12.83□□□□□ -0.36
LIMK1-203ENST00000435201 FER1L6-AS1Q8NA97 138 aa12.83□□□□□ -0.36
LIMK1-203ENST00000435201 GLMPQ8WWB7 406 aa12.83□□□□□ -0.36
LIMK1-203ENST00000435201 ZNF580Q9UK33 172 aa12.83□□□□□ -0.36
LIMK1-203ENST00000435201 J3QLI3 93 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 IGLC6P0CF74 106 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 BLCAPP62952 87 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 C9orf139Q6ZV77 190 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 MIEN1Q9BRT3 115 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 IGHV1-24A0A0C4DH33 117 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 A0A0G2JLM5 398 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 M0QZ24 198 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 IGLV1-40P01703 118 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 PF4V1P10720 104 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 TMEM78Q5T7P6 136 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 EBLN2Q6P2I7 272 aa12.82□□□□□ -0.36
LIMK1-203ENST00000435201 C2orf70A6NJV1 201 aa12.81□□□□□ -0.36
LIMK1-203ENST00000435201 ORM1P02763 201 aa12.81□□□□□ -0.36
LIMK1-203ENST00000435201 OR5AL1P0C617 328 aa12.81□□□□□ -0.36
LIMK1-203ENST00000435201 ZNF138P52744 262 aa12.81□□□□□ -0.36
LIMK1-203ENST00000435201 LINC01559Q495D7 138 aa12.81□□□□□ -0.36
LIMK1-203ENST00000435201 IL17RELQ6ZVW7 336 aa12.81□□□□□ -0.36
LIMK1-203ENST00000435201 C16orf92Q96LL3 132 aa12.81□□□□□ -0.36
LIMK1-203ENST00000435201 C2orf88Q9BSF0 95 aa12.81□□□□□ -0.36
LIMK1-203ENST00000435201 USP24Q9UPU5 2620 aa12.81□□□□□ -0.36
LIMK1-203ENST00000435201 A0A096LNT2 108 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 TRBV12-3P01733 135 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 FAM104BQ5XKR9 115 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 C9orf47Q6ZRZ4 202 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 BBC3Q96PG8 261 aaPredicted RBP12.8□□□□□ -0.36
LIMK1-203ENST00000435201 AGPAT4-IT1Q9H0P7 198 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 PPP1R14DQ9NXH3 145 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 MYO18BQ8IUG5 2567 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.8□□□□□ -0.361e-6■■■□□ 17.8
LIMK1-203ENST00000435201 TMEM213A2RRL7 107 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 HIST1H1AQ02539 215 aaPredicted RBP12.8□□□□□ -0.36
LIMK1-203ENST00000435201 CFHR3Q02985 330 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 SPATA45Q537H7 98 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 UNQ9165/PRO28630Q6UXU0 137 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 MRPL52Q86TS9 123 aaKnown RBP12.8□□□□□ -0.36
LIMK1-203ENST00000435201 ZNF843Q8N446 348 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 TMEM70Q9BUB7 260 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 U3KQK5 164 aa12.8□□□□□ -0.36
LIMK1-203ENST00000435201 SPG11Q96JI7 2443 aa12.79□□□□□ -0.36
LIMK1-203ENST00000435201 LEPROTL1O95214 131 aa12.79□□□□□ -0.36
LIMK1-203ENST00000435201 OR4X2Q8NGF9 303 aa12.79□□□□□ -0.36
LIMK1-203ENST00000435201 CNFNQ9BYD5 112 aa12.79□□□□□ -0.36
LIMK1-203ENST00000435201 KLK15Q9H2R5 256 aa12.79□□□□□ -0.36
LIMK1-203ENST00000435201 IGHV3-11P01762 117 aa12.78□□□□□ -0.36
LIMK1-203ENST00000435201 ZNF705AQ6ZN79 300 aaPredicted RBP12.78□□□□□ -0.36
LIMK1-203ENST00000435201 Q6ZS46 218 aa12.78□□□□□ -0.36
LIMK1-203ENST00000435201 NPFFR1Q9GZQ6 430 aa12.78□□□□□ -0.36
LIMK1-203ENST00000435201 ZFHX3Q15911 3703 aa12.78□□□□□ -0.36
LIMK1-203ENST00000435201 M0R143 59 aa12.78□□□□□ -0.36
LIMK1-203ENST00000435201 CRXO43186 299 aaPredicted RBP12.78□□□□□ -0.36
LIMK1-203ENST00000435201 TWIST1Q15672 202 aa12.78□□□□□ -0.36
LIMK1-203ENST00000435201 ORMDL3Q8N138 153 aa12.78□□□□□ -0.36
LIMK1-203ENST00000435201 AP5S1Q9NUS5 200 aa12.78□□□□□ -0.36
LIMK1-203ENST00000435201 SMAD7O15105 426 aaKnown RBP12.77□□□□□ -0.37
LIMK1-203ENST00000435201 CSN3P07498 182 aa12.77□□□□□ -0.37
LIMK1-203ENST00000435201 ZNF575Q86XF7 245 aa12.77□□□□□ -0.37
LIMK1-203ENST00000435201 AMN1Q8IY45 258 aa12.77□□□□□ -0.37
LIMK1-203ENST00000435201 KLHDC1Q8N7A1 406 aa12.77□□□□□ -0.37
LIMK1-203ENST00000435201 PSMG3-AS1Q96PY0 264 aa12.77□□□□□ -0.37
LIMK1-203ENST00000435201 LENEPQ9Y5L5 61 aa12.77□□□□□ -0.37
LIMK1-203ENST00000435201 C20orf202A1L168 122 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 D6R8Y8 96 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 EREGO14944 169 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 LOXL1Q08397 574 aaPredicted RBP12.76□□□□□ -0.37
LIMK1-203ENST00000435201 DEFB112Q30KQ8 113 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 FA2HQ7L5A8 372 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 PRSS3P2Q8NHM4 247 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 PRELID3AQ96N28 172 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 TMEM191AQ9H0A3 160 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 HSPB8Q9UJY1 196 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 SRSF1Q07955 248 aaKnown RBP eCLIP12.76□□□□□ -0.37
LIMK1-203ENST00000435201 MRPL51Q4U2R6 128 aaKnown RBP12.76□□□□□ -0.37
LIMK1-203ENST00000435201 ZNF738Q8NE65 137 aa12.76□□□□□ -0.37
LIMK1-203ENST00000435201 SYS1-DBNDD2H3BUS1 97 aa12.75□□□□□ -0.37
LIMK1-203ENST00000435201 TGFAP01135 160 aa12.75□□□□□ -0.37
LIMK1-203ENST00000435201 IGHV4-59P01825 116 aa12.75□□□□□ -0.37
LIMK1-203ENST00000435201 SSTP61278 116 aa12.75□□□□□ -0.37
LIMK1-203ENST00000435201 SNHG12Q9BXW3 62 aa12.75□□□□□ -0.37
LIMK1-203ENST00000435201 UQCR10Q9UDW1 63 aa12.75□□□□□ -0.37
LIMK1-203ENST00000435201 TRAV9-2A0A087WT02 112 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 MUC21A0A0G2JKD1 596 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 MUC21A0A140T8X8 626 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 A1L4Q6 167 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 TMEM89A2RUT3 159 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 SOCS3O14543 225 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 OVOL1O14753 267 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 MUC21Q5SSG8 566 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 GPHB5Q86YW7 130 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 MAP1LC3CQ9BXW4 147 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 IGKV3D-20A0A0C4DH25 116 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 IGHV7-4-1A0A0J9YVY3 117 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 C20orf173Q96LM9 149 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 LINC00477Q96M19 166 aa12.74□□□□□ -0.37
LIMK1-203ENST00000435201 DAZ1Q9NQZ3 744 aaKnown RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms