RNA–Protein interactions for RNA: ENST00000422797.5

LIMS1-207, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 1,544 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-207ENST00000422797 SAMD5Q5TGI4 173 aa8.57□□□□□ -1.04
LIMS1-207ENST00000422797 IL17RELQ6ZVW7 336 aa8.57□□□□□ -1.04
LIMS1-207ENST00000422797 TM2D2Q9BX73 214 aa8.57□□□□□ -1.04
LIMS1-207ENST00000422797 VPS13AQ96RL7 3174 aa8.57□□□□□ -1.04
LIMS1-207ENST00000422797 DMXL1Q9Y485 3027 aa8.57□□□□□ -1.04
LIMS1-207ENST00000422797 IGHV4-4A0A075B6R2 117 aa8.56□□□□□ -1.04
LIMS1-207ENST00000422797 GOSR1O95249 250 aa8.56□□□□□ -1.04
LIMS1-207ENST00000422797 PRSS1P07477 247 aa8.56□□□□□ -1.04
LIMS1-207ENST00000422797 CTSGP08311 255 aa8.56□□□□□ -1.04
LIMS1-207ENST00000422797 PLNP26678 52 aa8.56□□□□□ -1.04
LIMS1-207ENST00000422797 KLF17Q5JT82 389 aaPredicted RBP8.56□□□□□ -1.04
LIMS1-207ENST00000422797 FAM110DQ8TAY7 271 aaPredicted RBP8.56□□□□□ -1.04
LIMS1-207ENST00000422797 MYOZ3Q8TDC0 251 aa8.56□□□□□ -1.04
LIMS1-207ENST00000422797 CHAC1Q9BUX1 264 aa8.56□□□□□ -1.04
LIMS1-207ENST00000422797 CEP250Q9BV73 2442 aa8.56□□□□□ -1.04
LIMS1-207ENST00000422797 J3QR89 54 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 SCGB1A1P11684 91 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 PRSS57Q6UWY2 283 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 BCL6BQ8N143 479 aaPredicted RBP8.55□□□□□ -1.04
LIMS1-207ENST00000422797 MRAP2Q96G30 205 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 VGLL1Q99990 258 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 DKK2Q9UBU2 259 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 HILPDAQ9Y5L2 63 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 LENEPQ9Y5L5 61 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 CHD8Q9HCK8 2581 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 CHD6Q8TD26 2715 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 DMDP11532 3685 aa8.55□□□□□ -1.04
LIMS1-207ENST00000422797 TRAV12-1A0A0B4J245 112 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 SMKR1H3BMG3 65 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 SLC25A16P16260 332 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 ZNF80P51504 273 aaPredicted RBP8.54□□□□□ -1.04
LIMS1-207ENST00000422797 LAGE3Q14657 143 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 PCP2Q8IVA1 136 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 Q8NA96 180 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 ZNF502Q8TBZ5 544 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 HHLA3Q9XRX5 114 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 SMAD5-AS1Q9Y6J3 95 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 MALRD1Q5VYJ5 2156 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 LINC01549A6NIU2 74 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 IGHG4P01861 327 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 TMEM11P17152 192 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 GCSHP23434 173 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 TMEM78Q5T7P6 136 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 VMO1Q7Z5L0 202 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 CEND1Q8N111 149 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 Q8TAT8 98 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 TMEM158Q8WZ71 300 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 PSMG3-AS1Q96PY0 264 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 FOXC2Q99958 501 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 SH3BGRL2Q9UJC5 107 aa8.54□□□□□ -1.04
LIMS1-207ENST00000422797 OTOGLQ3ZCN5 2332 aa8.53□□□□□ -1.04
LIMS1-207ENST00000422797 IGLV2-18A0A075B6J9 118 aa8.53□□□□□ -1.04
LIMS1-207ENST00000422797 A0A087WX48 190 aa8.53□□□□□ -1.04
LIMS1-207ENST00000422797 NCBP2LA6PVI3 153 aaKnown RBP8.53□□□□□ -1.04
LIMS1-207ENST00000422797 BUB3O43684 328 aa8.53□□□□□ -1.04
LIMS1-207ENST00000422797 DLX1P56177 255 aa8.53□□□□□ -1.04
LIMS1-207ENST00000422797 PKD1L2Q7Z442 2459 aa8.53□□□□□ -1.04
LIMS1-207ENST00000422797 DTX2Q86UW9 622 aa8.53□□□□□ -1.04
LIMS1-207ENST00000422797 ATRXP46100 2492 aa8.52□□□□□ -1.04
LIMS1-207ENST00000422797 MAP1BP46821 2468 aaKnown RBP8.52□□□□□ -1.04
LIMS1-207ENST00000422797 TRBV25-1A0A075B6N4 114 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 F8W1H4 67 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 LYNX1G3V0Z9 82 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 PPP1R17O96001 155 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 LYNX1P0DP58 116 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 NDPQ00604 133 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 FOXE3Q13461 319 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 ORMDL2Q53FV1 153 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 C9orf47Q6ZRZ4 202 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 DYNAPQ8N1N2 210 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 RAB37Q96AX2 223 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 C18orf15Q96N68 181 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 ZFAND3Q9H8U3 227 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 ZFHX4Q86UP3 3567 aa8.52□□□□□ -1.05
LIMS1-207ENST00000422797 TRBV7-1A0A0A6YYK4 115 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 IGHV7-81A0A0B4J1V7 117 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 TMEM8BA6NDV4 472 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 SAP30O75446 220 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 MED14OSP0DP75 135 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 ZC2HC1BQ5TFG8 222 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 EEF1AKMT3Q96AZ1 226 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 METTL26Q96S19 204 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 FREM2Q5SZK8 3169 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 USP24Q9UPU5 2620 aa8.51□□□□□ -1.05
LIMS1-207ENST00000422797 E9PLD3 99 aa8.5□□□□□ -1.05
LIMS1-207ENST00000422797 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.5□□□□□ -1.05
LIMS1-207ENST00000422797 H7C1H1 209 aa8.5□□□□□ -1.05
LIMS1-207ENST00000422797 FXYD2P54710 66 aa8.5□□□□□ -1.05
LIMS1-207ENST00000422797 PRB3Q04118 309 aaPredicted RBP8.5□□□□□ -1.05
LIMS1-207ENST00000422797 ZNF575Q86XF7 245 aa8.5□□□□□ -1.05
LIMS1-207ENST00000422797 PHLDA1Q8WV24 401 aaPredicted RBP8.5□□□□□ -1.05
LIMS1-207ENST00000422797 C20orf78Q9BR46 151 aa8.5□□□□□ -1.05
LIMS1-207ENST00000422797 S4R3C0 116 aa8.5□□□□□ -1.05
LIMS1-207ENST00000422797 M0R381 172 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 FXYD7P58549 80 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 KLRD1Q13241 179 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 C15orf32Q32M92 178 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 C9orf139Q6ZV77 190 aa8.49□□□□□ -1.05
LIMS1-207ENST00000422797 NRACQ8N912 160 aa8.49□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms