RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 SH3BGRL2Q9UJC5 107 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 DCHS1Q96JQ0 3298 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 MALRD1Q5VYJ5 2156 aa8.35□□□□□ -1.07
USP54-204ENST00000422491 LAMTOR5O43504 91 aa8.34□□□□□ -1.07
USP54-204ENST00000422491 NDUFB3O43676 98 aa8.34□□□□□ -1.07
USP54-204ENST00000422491 GATA1P15976 413 aaPredicted RBP8.34□□□□□ -1.07
USP54-204ENST00000422491 FBXL15Q9H469 300 aa8.34□□□□□ -1.07
USP54-204ENST00000422491 MRPL16Q9NX20 251 aaKnown RBP8.34□□□□□ -1.07
USP54-204ENST00000422491 CD40P25942 277 aa8.34□□□□□ -1.07
USP54-204ENST00000422491 PRSS33Q8NF86 280 aa8.34□□□□□ -1.07
USP54-204ENST00000422491 Q8TAT8 98 aa8.34□□□□□ -1.07
USP54-204ENST00000422491 CDIP1Q9H305 208 aa8.34□□□□□ -1.07
USP54-204ENST00000422491 GEMIN7Q9H840 131 aaKnown RBP8.34□□□□□ -1.07
USP54-204ENST00000422491 TMEM178BH3BS89 294 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 SRSF2Q01130 221 aaKnown RBP8.33□□□□□ -1.08
USP54-204ENST00000422491 Q8N8P6 123 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 HIST1H4GQ99525 98 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 IGHV1-3A0A0C4DH29 117 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 C17orf100A8MU93 164 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 LINC01619G3V211 115 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 APOMO95445 188 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 FOXI1Q12951 378 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 MORN3Q6PF18 240 aaPredicted RBP8.33□□□□□ -1.08
USP54-204ENST00000422491 TECTAO75443 2155 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 DLX1P56177 255 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 IGFL2Q6UWQ7 119 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 Q6ZS92 163 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 C8orf86Q6ZUL3 223 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 C1QTNF4Q9BXJ3 329 aa8.33□□□□□ -1.08
USP54-204ENST00000422491 ZZEF1O43149 2961 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 A0A087WX48 190 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 IGLV1-47P01700 117 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 SMCPP49901 116 aaPredicted RBP8.32□□□□□ -1.08
USP54-204ENST00000422491 CFAP126Q5VTH2 177 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 NUP37Q8NFH4 326 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 ATP6V0E2Q8NHE4 81 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 ZNF418Q8TF45 676 aaPredicted RBP8.32□□□□□ -1.08
USP54-204ENST00000422491 SRSF8Q9BRL6 282 aaKnown RBP8.32□□□□□ -1.08
USP54-204ENST00000422491 TRAV17A0A0B4J275 112 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 PPIFP30405 207 aaKnown RBP8.32□□□□□ -1.08
USP54-204ENST00000422491 KLRD1Q13241 179 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 DTX2Q86UW9 622 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 SYT8Q8NBV8 401 aa8.32□□□□□ -1.08
USP54-204ENST00000422491 IGHG4P01861 327 aa8.31□□□□□ -1.08
USP54-204ENST00000422491 FHL3Q13643 280 aa8.31□□□□□ -1.08
USP54-204ENST00000422491 KALRNO60229 2985 aa8.31□□□□□ -1.08
USP54-204ENST00000422491 ORM1P02763 201 aa8.31□□□□□ -1.08
USP54-204ENST00000422491 PRB3Q04118 309 aaPredicted RBP8.31□□□□□ -1.08
USP54-204ENST00000422491 NFE4Q86UQ8 179 aa8.31□□□□□ -1.08
USP54-204ENST00000422491 CCL17Q92583 94 aa8.31□□□□□ -1.08
USP54-204ENST00000422491 FAM215AQ9Y5M1 114 aa8.31□□□□□ -1.08
USP54-204ENST00000422491 NCBP2LA6PVI3 153 aaKnown RBP8.3□□□□□ -1.08
USP54-204ENST00000422491 PLNP26678 52 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 FAM27E3Q08E93 113 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 ADIPOQQ15848 244 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 GFRALQ6UXV0 394 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 ASCL5Q7RTU5 278 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 MYOZ3Q8TDC0 251 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 ZNF48Q96MX3 618 aaPredicted RBP8.3□□□□□ -1.08
USP54-204ENST00000422491 CYSLTR1Q9Y271 337 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 S4R3C0 116 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 BUB1B-PAK6H3BSN5 160 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 SPINK8P0C7L1 97 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 CD59P13987 128 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 RPEQ96AT9 228 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 RAB1BQ9H0U4 201 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 KAAG1Q9UBP8 84 aa8.3□□□□□ -1.08
USP54-204ENST00000422491 MYMXA0A1B0GTQ4 84 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 NDUFA3O95167 84 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 MT-ATP8P03928 68 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 LAGE3Q14657 143 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 ZNF672Q499Z4 452 aaPredicted RBP8.29□□□□□ -1.08
USP54-204ENST00000422491 LCNL1Q6ZST4 164 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 C1orf210Q8IVY1 113 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 NRACQ8N912 160 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 ZDBF2Q9HCK1 2354 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 FABP5P3A8MUU1 101 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 F8W735 103 aaPredicted RBP8.29□□□□□ -1.08
USP54-204ENST00000422491 HOXA3O43365 443 aaPredicted RBP8.29□□□□□ -1.08
USP54-204ENST00000422491 HLA-DMBP28068 263 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 IGFL4Q6B9Z1 124 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 ARRDC1-AS1Q9H2J1 176 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 PGPEP1Q9NXJ5 209 aa8.29□□□□□ -1.08
USP54-204ENST00000422491 CNIH1O95406 144 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 TSPAN13O95857 204 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 TRGV3P03979 118 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 RPL7P18124 248 aaKnown RBP8.28□□□□□ -1.08
USP54-204ENST00000422491 EFNA4P52798 201 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 XGP55808 180 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 Q6ZUT4 128 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 DLX4Q92988 240 aaPredicted RBP8.28□□□□□ -1.08
USP54-204ENST00000422491 SMAD5-AS1Q9Y6J3 95 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 ZNF318Q5VUA4 2279 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 GPR179Q6PRD1 2367 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 F8VRH5 84 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 IL17RELQ6ZVW7 336 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 DEFB123Q8N688 67 aa8.28□□□□□ -1.08
USP54-204ENST00000422491 TRAV12-1A0A0B4J245 112 aa8.27□□□□□ -1.08
USP54-204ENST00000422491 OR11H12B2RN74 326 aa8.27□□□□□ -1.08
USP54-204ENST00000422491 OR11H1Q8NG94 326 aa8.27□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms