RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 HSBP1O75506 76 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 IGLV2-8P01709 118 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 FBLN7Q53RD9 439 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 FAM159AQ6UWV7 190 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 C17orf77Q96MU5 243 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 MYO18BQ8IUG5 2567 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 TRAV8-1A0A0A6YYK1 113 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 HAX1O00165 279 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 CBLN1P23435 193 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 COX8CQ7Z4L0 72 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 OR8A1Q8NGG7 326 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 DMXL1Q9Y485 3027 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 G0S2P27469 103 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 TMEM95Q3KNT9 176 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 SPANXN1Q5VSR9 72 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 FA2HQ7L5A8 372 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 OR11H1Q8NG94 326 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 IGKV3-7A0A075B6H7 116 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 CLPSL1A2RUU4 121 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 TWIST1Q15672 202 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 OR2K2Q8NGT1 345 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 USP24Q9UPU5 2620 aa6.43□□□□□ -1.38
USP54-203ENST00000418501 PF4P02776 101 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 TCTEX1D4Q5JR98 221 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 ZC2HC1AQ96GY0 325 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 NAV2Q8IVL1 2488 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 Q0VG73 95 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 FOXI2Q6ZQN5 318 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 Q6ZSV7 163 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 LAMTOR2Q9Y2Q5 125 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 NPIPB6E9PJ23 425 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 TFPI2P48307 235 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 FOXA3P55318 350 aaPredicted RBP6.42□□□□□ -1.38
USP54-203ENST00000418501 OR9G4Q8NGQ1 327 aa6.42□□□□□ -1.38
USP54-203ENST00000418501 TRGV11A0A075B6L2 103 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 IGHV4OR15-8A0A075B7B6 117 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 A0A087WW49 117 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 C2orf70A6NJV1 201 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 C21orf62-AS1Q17RA5 79 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 IQCJQ1A5X6 159 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 PSMG4Q5JS54 123 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 KRTAP1-3Q8IUG1 177 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 HIST3H2BBQ8N257 126 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 MYOZ3Q8TDC0 251 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 SPAG8Q99932 426 aaPredicted RBP6.41□□□□□ -1.38
USP54-203ENST00000418501 GPR61Q9BZJ8 451 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 NAGKQ9UJ70 344 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 SMAD5-AS1Q9Y6J3 95 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 SPG11Q96JI7 2443 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 LINC01559Q495D7 138 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 COA6Q5JTJ3 125 aaKnown RBP6.41□□□□□ -1.38
USP54-203ENST00000418501 UNQ9165/PRO28630Q6UXU0 137 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 PACRGQ96M98 296 aaPredicted RBP6.41□□□□□ -1.38
USP54-203ENST00000418501 CBY1Q9Y3M2 126 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 MED13LQ71F56 2210 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 TMSB15BA0A087X1C1 80 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 MED14OSP0DP75 135 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 FABP4P15090 132 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 SRIP30626 198 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 TMEM136Q6ZRR5 245 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 PRSS3P2Q8NHM4 247 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 AGPAT4-IT1Q9H0P7 198 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 PHLDA3Q9Y5J5 127 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 PHOX2AO14813 284 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 TRBV12-3P01733 135 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 PCP4P48539 62 aa6.41□□□□□ -1.38
USP54-203ENST00000418501 KLF5Q13887 457 aaPredicted RBP6.41□□□□□ -1.38
USP54-203ENST00000418501 OR5AL1P0C617 328 aa6.4□□□□□ -1.38
USP54-203ENST00000418501 OR10D4PQ8NGN7 298 aa6.4□□□□□ -1.38
USP54-203ENST00000418501 CHCHD1Q96BP2 118 aaKnown RBP6.4□□□□□ -1.38
USP54-203ENST00000418501 VGLL1Q99990 258 aa6.4□□□□□ -1.38
USP54-203ENST00000418501 ZNF705FA8MVS1 300 aaPredicted RBP6.4□□□□□ -1.38
USP54-203ENST00000418501 CCL24O00175 119 aa6.4□□□□□ -1.38
USP54-203ENST00000418501 RNF182Q8N6D2 247 aa6.4□□□□□ -1.38
USP54-203ENST00000418501 MS4A6AQ9H2W1 248 aa6.4□□□□□ -1.38
USP54-203ENST00000418501 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.4□□□□□ -1.393e-6■■■□□ 18.7
USP54-203ENST00000418501 IGLV2-11P01706 119 aa6.4□□□□□ -1.39
USP54-203ENST00000418501 HIST2H2BCQ6DN03 193 aa6.4□□□□□ -1.39
USP54-203ENST00000418501 NAV3Q8IVL0 2385 aa6.4□□□□□ -1.39
USP54-203ENST00000418501 RNASE4P34096 147 aaKnown RBP6.39□□□□□ -1.39
USP54-203ENST00000418501 ORMDL3Q8N138 153 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 Q8TAT8 98 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 C8orf49Q96NF6 230 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 NDUFAF3Q9BU61 184 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 MCRIP2Q9BUT9 160 aaKnown RBP6.39□□□□□ -1.39
USP54-203ENST00000418501 HSPB8Q9UJY1 196 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 TSTD3H0UI37 97 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 EREGO14944 169 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 CA1P00915 261 aaPredicted RBP6.39□□□□□ -1.39
USP54-203ENST00000418501 CKS2P33552 79 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 PRRC2AP48634 2157 aaKnown RBP6.39□□□□□ -1.39
USP54-203ENST00000418501 AMTP48728 403 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 ERCC8Q13216 396 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 NDUFA11Q86Y39 141 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 CREBBPQ92793 2442 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 TMEM213A2RRL7 107 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 SCGB1D1O95968 90 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 APOHP02749 345 aaPredicted RBP6.39□□□□□ -1.39
USP54-203ENST00000418501 GFI1BQ5VTD9 330 aa6.39□□□□□ -1.39
USP54-203ENST00000418501 RNASEKQ6P5S7 137 aaKnown RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms